Guillaume Marcais
Guillaume Marcais
Project Scientist
Adresse e-mail validée de cs.cmu.edu
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A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
G Marçais, C Kingsford
Bioinformatics 27 (6), 764-770, 2011
18102011
A whole-genome assembly of the domestic cow, Bos taurus
AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ...
Genome biology 10 (4), R42, 2009
11492009
The MaSuRCA genome assembler
AV Zimin, G Marçais, D Puiu, M Roberts, SL Salzberg, JA Yorke
Bioinformatics 29 (21), 2669-2677, 2013
8082013
GAGE: A critical evaluation of genome assemblies and assembly algorithms
SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ...
Genome research 22 (3), 557-567, 2012
7602012
GAGE: A critical evaluation of genome assemblies and assembly algorithms
SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ...
Genome research 22 (3), 557-567, 2012
7602012
MUMmer4: A fast and versatile genome alignment system
G Marçais, AL Delcher, AM Phillippy, R Coston, SL Salzberg, A Zimin
PLoS computational biology 14 (1), e1005944, 2018
4262018
Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies
DB Neale, JL Wegrzyn, KA Stevens, AV Zimin, D Puiu, MW Crepeau, ...
Genome Biology 15 (3), R59, 2014
4202014
Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis
RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, LA Blomberg, P Bouffard, ...
PLoS biology 8 (9), e1000475, 2010
4142010
Sequencing and assembly of the 22-Gb loblolly pine genome
A Zimin, KA Stevens, MW Crepeau, A Holtz-Morris, M Koriabine, ...
Genetics 196 (3), 875-890, 2014
2692014
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
AV Zimin, D Puiu, MC Luo, T Zhu, S Koren, G Marçais, JA Yorke, J Dvořák, ...
Genome Research 27 (5), 787-792, 2017
2102017
A new rhesus macaque assembly and annotation for next-generation sequencing analyses
AV Zimin, AS Cornish, MD Maudhoo, RM Gibbs, X Zhang, S Pandey, ...
Biology direct 9 (1), 20, 2014
1482014
Sequence of the Sugar Pine Megagenome
KA Stevens, JL Wegrzyn, A Zimin, D Puiu, M Crepeau, C Cardeno, R Paul, ...
Genetics 204 (4), 1613-1626, 2016
1012016
QuorUM: an error corrector for Illumina reads
G Marçais, JA Yorke, A Zimin
PloS one 10 (6), e0130821, 2015
652015
Mis-assembled “segmental duplications” in two versions of the Bos taurus genome
AV Zimin, DR Kelley, M Roberts, G Marçais, SL Salzberg, JA Yorke
PLoS One 7 (8), e42680, 2012
352012
Improving the performance of minimizers and winnowing schemes
G Marçais, D Pellow, D Bork, Y Orenstein, R Shamir, C Kingsford
Bioinformatics 33 (14), i110-i117, 2017
252017
Parsimonious reconstruction of network evolution
R Patro, E Sefer, J Malin, G Marçais, S Navlakha, C Kingsford
Algorithms for Molecular Biology 7 (1), 25, 2012
212012
Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.
Y Orenstein, D Pellow, G Marçais, R Shamir, C Kingsford
PLoS computational biology 13 (10), e1005777, 2017
192017
Sketching and Sublinear Data Structures in Genomics
G Marçais, B Solomon, R Patro, C Kingsford
Annual Review of Biomedical Data Science 2, 2019
162019
Asymptotically optimal minimizers schemes
G Marçais, D DeBlasio, C Kingsford
Bioinformatics 34 (13), i13-i22, 2018
162018
Locality sensitive hashing for the edit distance
G Marcais, D DeBlasio, P Pandey, C Kingsford
BioRxiv, 534446, 2019
152019
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