Alan M Moses
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Population genomics of domestic and wild yeasts
G Liti, DM Carter, AM Moses, J Warringer, L Parts, SA James, RP Davey, ...
Nature 458 (7236), 337-341, 2009
14642009
In vivo enhancer analysis of human conserved non-coding sequences
LA Pennacchio, N Ahituv, AM Moses, S Prabhakar, MA Nobrega, ...
Nature 444 (7118), 499-502, 2006
11932006
NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction
ANN Ba, A Pogoutse, N Provart, AM Moses
BMC bioinformatics 10 (1), 1-11, 2009
4382009
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
DA Pollard, VN Iyer, AM Moses, MB Eisen
PLoS genetics 2 (10), e173, 2006
3822006
TreeFam: 2008 update
J Ruan, H Li, Z Chen, A Coghlan, LJM Coin, Y Guo, JK Heriche, Y Hu, ...
Nucleic acids research 36 (suppl_1), D735-D740, 2007
3242007
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions
A Haudry, AE Platts, E Vello, DR Hoen, M Leclercq, RJ Williamson, ...
Nature genetics 45 (8), 891-898, 2013
3042013
Trait variation in yeast is defined by population history
J Warringer, E Zörgö, FA Cubillos, A Zia, A Gjuvsland, JT Simpson, ...
PLoS genetics 7 (6), e1002111, 2011
3042011
Large-Scale Turnover of Functional Transcription Factor Binding Sites in Drosophila
AM Moses, DA Pollard, DA Nix, VN Iyer, XY Li, MD Biggin, MB Eisen
PLoS computational biology 2 (10), e130, 2006
2872006
Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi
AP Gasch, AM Moses, DY Chiang, HB Fraser, M Berardini, MB Eisen, ...
PLoS biology 2 (12), e398, 2004
2682004
A high-definition view of functional genetic variation from natural yeast genomes
A Bergström, JT Simpson, F Salinas, B Barré, L Parts, A Zia, ...
Molecular biology and evolution 31 (4), 872-888, 2014
2612014
Yeast proteome dynamics from single cell imaging and automated analysis
YT Chong, JLY Koh, H Friesen, SK Duffy, MJ Cox, A Moses, J Moffat, ...
Cell 161 (6), 1413-1424, 2015
2502015
Revealing the genetic structure of a trait by sequencing a population under selection
L Parts, FA Cubillos, J Warringer, K Jain, F Salinas, SJ Bumpstead, ...
Genome research 21 (7), 1131-1138, 2011
2502011
MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model
AM Moses, DY Chiang, DA Pollard, VN Iyer, MB Eisen
Genome biology 5 (12), 1-15, 2004
1982004
Position specific variation in the rate of evolution in transcription factor binding sites
AM Moses, DY Chiang, M Kellis, ES Lander, MB Eisen
BMC evolutionary biology 3 (1), 1-13, 2003
1932003
Evidence for widespread adaptive evolution of gene expression in budding yeast
HB Fraser, AM Moses, EE Schadt
Proceedings of the National Academy of Sciences 107 (7), 2977-2982, 2010
1492010
Short linear motifs–ex nihilo evolution of protein regulation
NE Davey, MS Cyert, AM Moses
Cell Communication and Signaling 13 (1), 1-15, 2015
1342015
Phylogenetic motif detection by expectation-maximization on evolutionary mixtures
AM Moses, DY Chiang, MB Eisen
Biocomputing 2004, 324-335, 2003
1312003
A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis
S Lumba, S Toh, LF Handfield, M Swan, R Liu, JY Youn, SR Cutler, ...
Developmental Cell 29 (3), 360-372, 2014
1012014
Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase
AM Moses, JK Hériché, R Durbin
Genome biology 8 (2), 1-14, 2007
942007
Proteome-wide discovery of evolutionary conserved sequences in disordered regions
AN Nguyen Ba, BJ Yeh, D Van Dyk, AR Davidson, BJ Andrews, EL Weiss, ...
Science signaling 5 (215), rs1-rs1, 2012
922012
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