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Yu Yamamori
Yu Yamamori
PostDoc
Adresse e-mail validée de iam.u-tokyo.ac.jp - Page d'accueil
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Année
Mitochondrial sorting and assembly machinery operates by β-barrel switching
H Takeda, A Tsutsumi, T Nishizawa, C Lindau, JV Busto, LS Wenz, ...
Nature 590 (7844), 163-169, 2021
722021
Interaction-component analysis of the hydration and urea effects on cytochrome c
Y Yu, I Ryosuke, K Yasuhito, S Shun, M Nobuyuki
J. Chem. Phys. 144, 085102, 2016
292016
MuSTAR MD: Multi-scale sampling using temperature accelerated and replica exchange molecular dynamics
Y Yamamori, A Kitao
The Journal of Chemical Physics 139 (14), 2013
282013
Modeling SARS‐CoV‐2 proteins in the CASP‐commons experiment
A Kryshtafovych, J Moult, WM Billings, D Della Corte, K Fidelis, S Kwon, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1987-1996, 2021
192021
Free-energy analysis of the hydration and cosolvent effects on the β-sheet aggregation through all-atom molecular dynamics simulation
K Masutani, Y Yamamori, K Kim, N Matubayasi
The Journal of Chemical Physics 150 (14), 2019
162019
HMGB1 signaling phosphorylates Ku70 and impairs DNA damage repair in Alzheimer’s disease pathology
H Tanaka, K Kondo, K Fujita, H Homma, K Tagawa, X Jin, M Jin, ...
Communications Biology 4 (1), 1175, 2021
142021
A multipoint guidance mechanism for β-barrel folding on the SAM complex
H Takeda, JV Busto, C Lindau, A Tsutsumi, K Tomii, K Imai, Y Yamamori, ...
Nature structural & molecular biology 30 (2), 176-187, 2023
112023
Protein–protein interaction prediction methods: from docking-based to AI-based approaches
Y Tsuchiya, Y Yamamori, K Tomii
Biophysical Reviews 14 (6), 1341-1348, 2022
102022
Probabilistic analysis for identifying the driving force of protein folding
Y Tokunaga, Y Yamamori, N Matubayasi
The Journal of Chemical Physics 148 (12), 2018
102018
Interaction-component analysis of the effects of urea and its alkylated derivatives on the structure of T4-lysozyme
Y Yamamori, N Matubayasi
The Journal of Chemical Physics 146 (22), 2017
82017
Conformational change in the monomeric alpha-synuclein imparts fibril polymorphs
C Aguirre, K Ikenaka, M So, T Maruno, K Yamaguchi, K Nakajima, ...
bioRxiv, 2022.02. 10.479831, 2022
32022
Crim1C140S mutant mice reveal the importance of cysteine 140 in the internal region 1 of CRIM1 for its physiological functions
T Furuichi, M Tsukamoto, M Saito, Y Sato, N Oiji, K Yagami, R Fukumura, ...
Mammalian Genome 30, 329-338, 2019
32019
Application of Homology Modeling by Enhanced Profile–Profile Alignment and Flexible-Fitting Simulation to Cryo-EM Based Structure Determination
Y Yamamori, K Tomii
International Journal of Molecular Sciences 23 (4), 1977, 2022
22022
Author Correction: A multipoint guidance mechanism for β-barrel folding on the SAM complex
H Takeda, JV Busto, C Lindau, A Tsutsumi, K Tomii, K Imai, Y Yamamori, ...
Nature structural & molecular biology 30 (2), 233, 2023
12023
Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium
K Kimura, F Kawai, H Kubota-Kawai, Y Watanabe, K Tomii, R Kojima, ...
The Journal of Biochemistry 171 (4), 429-441, 2022
12022
An ensemble reweighting method for combining the information of experiments and simulations
Y Yamamori, K Tomii
Chemical Physics Letters 779, 138821, 2021
12021
PoSSuM v. 3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins
Y Tsuchiya, T Yonezawa, Y Yamamori, H Inoura, M Osawa, K Ikeda, ...
Journal of Chemical Information and Modeling 63 (23), 7578-7587, 2023
2023
3D-models of SARS-CoV-2 proteins in the CASP Commons (COVID-19, 2020) experiment
Y Yamamori, Y Tsuchiya, K Tomii
(No Title), 2020
2020
1P072 Large time step molecular dynamics using Torsion Angle Molecular Dynamics (01D. Protein: Function, Poster, The 52nd Annual Meeting of the Biophysical Society of Japan …
Y Yamamori, A Kitao
Seibutsu Butsuri 54 (supplement1-2), S152, 2014
2014
Erratum:“MuSTAR MD: Multi-scale sampling using temperature accelerated and replica exchange molecular dynamics”[J. Chem. Phys. 139, 145105 (2013)]
Y Yamamori, A Kitao
The Journal of Chemical Physics 139 (22), 12B802_1, 2013
2013
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