| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1168 | 2020 |
| Perspectives on ENCODE MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ... Nature 583 (7818), 693-698, 2020 | 92 | 2020 |
| Predicting gene expression in massively parallel reporter assays: A comparative study A Kreimer, H Zeng, MD Edwards, Y Guo, K Tian, S Shin, R Welch, ... Human mutation 38 (9), 1240-1250, 2017 | 50 | 2017 |
| Epstein-Barr virus nuclear antigen 3 (EBNA3) proteins regulate EBNA2 binding to distinct RBPJ genomic sites A Wang, R Welch, B Zhao, T Ta, S Keleş, E Johannsen Journal of virology 90 (6), 2906-2919, 2016 | 42 | 2016 |
| Epstein-Barr virus infection promotes epithelial cell growth by attenuating differentiation-dependent exit from the cell cycle MR Eichelberg, R Welch, JT Guidry, A Ali, M Ohashi, KR Makielski, ... MBio 10 (4), 10.1128/mbio. 01332-19, 2019 | 23 | 2019 |
| Perm-seq: mapping protein-DNA interactions in segmental duplication and highly repetitive regions of genomes with prior-enhanced read mapping X Zeng, B Li, R Welch, C Rojo, Y Zheng, CN Dewey, S Keleş PLOS Computational Biology 11 (10), e1004491, 2015 | 15 | 2015 |
| A lineage-specific requirement for YY1 Polycomb Group protein function in early T cell development ALFV Assumpção, G Fu, DK Singh, Z Lu, AM Kuehnl, R Welch, IM Ong, ... Development 148 (7), dev197319, 2021 | 7 | 2021 |
| Multiomic analysis reveals decidual‐specific transcriptional programing of MAIT cells J Vazquez, M Chavarria, DA Chasman, R Welch Schwartz, CT Tyler, ... American Journal of Reproductive Immunology 86 (6), e13495, 2021 | 5 | 2021 |
| Data exploration, quality control and statistical analysis of ChIP-exo/nexus experiments R Welch, D Chung, J Grass, R Landick, S Keleş Nucleic Acids Research 45 (15), e145-e145, 2017 | 5 | 2017 |
| Epstein-Barr Virus Infection Promotes Epithelial Cell Growth by Attenuating Differentiation-Dependent Exit from the Cell Cycle. mBio. 2019; 10 (4) MR Eichelberg, R Welch, JT Guidry, A Ali, M Ohashi, KR Makielski | 4 | |
| CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods N Null, S Jain, C Bakolitsa, SE Brenner, P Radivojac, J Moult, S Repo, ... Genome Biology 25 (1), 1-46, 2024 | 2 | 2024 |
| Proteogenomic and V (D) J Analysis of Human Decidual T Cells Highlights Unique Transcriptional Programming and Clonal Distribution DA Chasman, R Welch Schwartz, J Vazquez, M Chavarria, ET Jenkins, ... The Journal of Immunology 211 (1), 154-162, 2023 | 2 | 2023 |
| Genome-wide association study (GWAS) of circulating vitamin D outcomes among individuals of African ancestry LA Parlato, R Welch, IM Ong, J Long, Q Cai, MD Steinwandel, WJ Blot, ... The American Journal of Clinical Nutrition 117 (2), 308-316, 2023 | 2 | 2023 |
| Kele, s S, Kenney SC, Scott RS, Johannsen E. 2019. Epstein-Barr virus infection promotes epithelial cell growth by attenuating differentiation-dependent exit from the cell … MR Eichelberg, R Welch, JT Guidry, A Ali, M Ohashi, KR Makielski, ... differentiation 10 (4), e01332-19, 2019 | 1 | 2019 |
| Development of a next-generation sequencing protocol for the canine T cell receptor beta chain repertoire CL Zuleger, RW Schwartz, IM Ong, MA Newton, DM Vail, MR Albertini Veterinary Immunology and Immunopathology 268, 110702, 2024 | | 2024 |
| Critical assessment of genome interpretation consortium. CAGI, the critical assessment of genome interpretation, establishes progress and pprospects for computational genetic … S Jain, C Bakolitsa, EB Steven, P Radivojac, J Moult, S Repo, AH Roger, ... Genome Biology 22 (22; 25 (1): 53.), 1-46, 2024 | | 2024 |
| Statistical Methods for Chip-Exo/Nexus Quality Control, and Fine-mapping of Multi-trait SNPs in High LD by Using Next-generation Sequencing Data R Welch The University of Wisconsin-Madison, 2018 | | 2018 |
| Analysis of ChIP-seq Data with ‘mosaics’ Package: MOSAiCS and MOSAiCS-HMM D Chung, PF Kuan, R Welch, S Keles | | 2016 |
| Package ‘mosaics’ D Chung, PF Kuan, R Welch, S Keles, MD Chung, S biocViews ChIPseq | | 2016 |
Sunduz KelesProfessor of Statistics and Biostatistics, University of WisconsinVerified email at stat.wisc.edu
