Marina Sirota

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Atul J. ButteDirector, Bakar Computational Health Sciences Institute, University of California, San FranciscoAdresse e-mail validée de ucsf.edu
Minnie SarwalProfessor, UCSF, Stanford UniversityAdresse e-mail validée de ucsf.edu
Bin ChenMichigan State UniversityAdresse e-mail validée de hc.msu.edu
Dvir AranAssistant Professor @ Technion - Israel Institute of TechnologyAdresse e-mail validée de technion.ac.il
Serafim BatzoglouSeerAdresse e-mail validée de seer.bio
Tara SigdelAssoc. Professor, UCSF Medical SchoolAdresse e-mail validée de ucsf.edu
Hyojung PaikPostdoctoral fellow, University of California San FranciscoAdresse e-mail validée de ucsf.edu
Aolin WangAnalysis Group, Inc.Adresse e-mail validée de analysisgroup.com
Alexander A MorganKhosla VenturesAdresse e-mail validée de stanford.edu
Eugene DavydovGoogleAdresse e-mail validée de google.com
Joel DudleyInstitute Director and Associate Professor, Icahn School of Medicine at Mount SinaiAdresse e-mail validée de mssm.edu
Dexter HadleyChief of AI, University of Central Florida, College of MedicineAdresse e-mail validée de ucf.edu
Purvesh KhatriStanford UniversityAdresse e-mail validée de stanford.edu
Rong ChenDirector of Clinical Genome Informatics & Assistant Professor, Mount Sinai School of MedicineAdresse e-mail validée de mssm.edu
Keiichi KodamaAssistant Professor of Pediatrics at UCSFAdresse e-mail validée de ucsf.edu
Stephen L. HauserUCSFAdresse e-mail validée de ucsf.edu
Tracy KuoAdresse e-mail validée de alxoncology.com
Greg CooperFaculty Investigator, HudsonAlpha Institute for BiotechnologyAdresse e-mail validée de hudsonalpha.org
David GoodeGroup Leader, Computational Biology, Peter MacCallum Cancer CentreAdresse e-mail validée de petermac.org
Jacob GlanvilleFounder & CEO, CentivaxAdresse e-mail validée de hackbio.com

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Marina Sirota

Associate Professor, Bakar Computational Health Sciences Institute, UCSF

Adresse e-mail validée de ucsf.edu

Computational biology bioinformatics


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-18, 2007	2252	2007
Identifying a high fraction of the human genome to be under selective constraint using GERP++ EV Davydov, DL Goode, M Sirota, GM Cooper, A Sidow, S Batzoglou PLoS computational biology 6 (12), e1001025, 2010	1811	2010
Ten years of pathway analysis: current approaches and outstanding challenges P Khatri, M Sirota, AJ Butte PLoS computational biology 8 (2), e1002375, 2012	1715	2012
Systematic pan-cancer analysis of tumour purity D Aran, M Sirota, AJ Butte Nature communications 6 (1), 8971, 2015	1009	2015
Discovery and preclinical validation of drug indications using compendia of public gene expression data M Sirota, JT Dudley, J Kim, AP Chiang, AA Morgan, A Sweet-Cordero, ... Science translational medicine 3 (96), 96ra77-96ra77, 2011	853	2011
Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease JT Dudley, M Sirota, M Shenoy, RK Pai, S Roedder, AP Chiang, ... Science translational medicine 3 (96), 96ra76-96ra76, 2011	637	2011
Comprehensive analysis of normal adjacent to tumor transcriptomes D Aran, R Camarda, J Odegaard, H Paik, B Oskotsky, G Krings, A Goga, ... Nature communications 8 (1), 1077, 2017	474	2017
B cell exchange across the blood-brain barrier in multiple sclerosis H von Büdingen, TC Kuo, M Sirota, CJ van Belle, L Apeltsin, J Glanville, ... The Journal of Clinical Investigation, 2012	250	2012
Immunoglobulin class-switched B cells form an active immune axis between CNS and periphery in multiple sclerosis A Palanichamy, L Apeltsin, TC Kuo, M Sirota, S Wang, SJ Pitts, ... Science translational medicine 6 (248), 248ra106-248ra106, 2014	249	2014
Non-synonymous and synonymous coding SNPs show similar likelihood and effect size of human disease association R Chen, EV Davydov, M Sirota, AJ Butte PloS one 5 (10), e13574, 2010	210	2010
Cross-tissue analysis of gene and protein expression in normal and cancer tissues I Kosti, N Jain, D Aran, AJ Butte, M Sirota Scientific reports 6 (1), 24799, 2016	195	2016
Autoimmune disease classification by inverse association with SNP alleles M Sirota, MA Schaub, S Batzoglou, WH Robinson, AJ Butte PLoS genetics 5 (12), e1000792, 2009	189	2009
Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets B Chen, L Ma, H Paik, M Sirota, W Wei, MS Chua, S So, AJ Butte Nature communications 8 (1), 16022, 2017	175	2017
Expression-based genome-wide association study links the receptor CD44 in adipose tissue with type 2 diabetes K Kodama, M Horikoshi, K Toda, S Yamada, K Hara, J Irie, M Sirota, ... Proceedings of the National Academy of Sciences 109 (18), 7049-7054, 2012	170	2012
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy MS Ghaemi, DB DiGiulio, K Contrepois, B Callahan, TTM Ngo, ... Bioinformatics 35 (1), 95-103, 2019	150	2019
CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novogene prediction SS Gross, CB Do, M Sirota, S Batzoglou Genome biology 8, 1-16, 2007	131	2007
Comprehensive transcriptomic analysis of cell lines as models of primary tumors across 22 tumor types K Yu, B Chen, D Aran, J Charalel, C Yau, DM Wolf, LJ Van ‘T Veer, ... Nature communications 10 (1), 3574, 2019	124	2019
Mortality risk among patients with COVID-19 prescribed selective serotonin reuptake inhibitor antidepressants T Oskotsky, I Marić, A Tang, B Oskotsky, RJ Wong, N Aghaeepour, ... JAMA network open 4 (11), e2133090-e2133090, 2021	121	2021
Environmental influences on reproductive health: the importance of chemical exposures A Wang, A Padula, M Sirota, TJ Woodruff Fertility and sterility 106 (4), 905-929, 2016	108	2016
dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit DG Bunis, J Andrews, GK Fragiadakis, TD Burt, M Sirota Bioinformatics 36 (22-23), 5535-5536, 2020	99	2020

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