| Topological domains in mammalian genomes identified by analysis of chromatin interactions JR Dixon, S Selvaraj, F Yue, A Kim, Y Li, Y Shen, M Hu, JS Liu, B Ren Nature 485 (7398), 376-380, 2012 | 6826 | 2012 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1901 | 2014 |
| A map of the cis-regulatory sequences in the mouse genome Y Shen, F Yue, DF McCleary, Z Ye, L Edsall, S Kuan, U Wagner, J Dixon, ... Nature 488 (7409), 116-120, 2012 | 1535 | 2012 |
| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1159 | 2020 |
| Topologically associating domains are stable units of replication-timing regulation BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ... Nature 515 (7527), 402-405, 2014 | 919 | 2014 |
| Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome W Xie, CL Barr, A Kim, F Yue, AY Lee, J Eubanks, EL Dempster, B Ren Cell 148 (4), 816-831, 2012 | 597 | 2012 |
| The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions Y Wang, F Song, B Zhang, L Zhang, J Xu, D Kuang, D Li, MNK Choudhary, ... Genome biology 19 (1), 151, 2018 | 498 | 2018 |
| Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues GC Hon, N Rajagopal, Y Shen, DF McCleary, F Yue, MD Dang, B Ren Nature genetics 45 (10), 1198-1206, 2013 | 486 | 2013 |
| HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient T Yang, F Zhang, GG Yardımcı, F Song, RC Hardison, WS Noble, F Yue, ... Genome research 27 (11), 1939-1949, 2017 | 398 | 2017 |
| An encyclopedia of mouse DNA elements (Mouse ENCODE) JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ... Genome biology 13 (8), 418, 2012 | 369 | 2012 |
| Inherited GATA3 variants are associated with Ph-like childhood acute lymphoblastic leukemia and risk of relapse V Perez-Andreu, KG Roberts, RC Harvey, W Yang, C Cheng, D Pei, H Xu, ... Nature genetics 45 (12), 1494-1498, 2013 | 325 | 2013 |
| Integrative detection and analysis of structural variation in cancer genomes JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ... Nature genetics 50 (10), 1388, 2018 | 314 | 2018 |
| Epigenetic Priming of Enhancers Predicts Developmental Competence of hESC-Derived Endodermal Lineage Intermediates A Wang, F Yue, Y Li, R Xie, T Harper, NA Patel, K Muth, J Palmer, Y Qiu, ... Cell stem cell 16 (4), 386-399, 2015 | 264 | 2015 |
| Integrative analysis of haplotype-resolved epigenomes across human tissues D Leung, I Jung, N Rajagopal, A Schmitt, S Selvaraj, AY Lee, CA Yen, ... Nature 518 (7539), 350-354, 2015 | 250 | 2015 |
| Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus Y Zhang, L An, J Xu, B Zhang, WJ Zheng, M Hu, J Tang, F Yue Nature communications 9 (1), 750, 2018 | 176 | 2018 |
| An encyclopedia of mouse DNA elements (Mouse ENCODE) EC Mouse, JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, ... Genome Biol 13 (8), 418, 2012 | 146 | 2012 |
| FOXA1, GATA3 and PPARɣ cooperate to drive luminal subtype in bladder cancer: a molecular analysis of established human cell lines JI Warrick, V Walter, H Yamashita, E Chung, L Shuman, VO Amponsa, ... Scientific reports 6 (1), 1-15, 2016 | 143 | 2016 |
| A genome-wide association study of susceptibility to acute lymphoblastic leukemia in adolescents and young adults. V Perez-Andreu, KG Roberts, H Xu, C Smith, H Zhang, W Yang, ... Blood, 2014 | 122 | 2014 |
| An integrative ENCODE resource for cancer genomics J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ... Nature communications 11 (1), 1-11, 2020 | 106 | 2020 |
| Measuring the reproducibility and quality of Hi-C data GG Yardımcı, H Ozadam, MEG Sauria, O Ursu, KK Yan, T Yang, ... Genome biology 20 (1), 57, 2019 | 103 | 2019 |
