Gordon K Smyth
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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
MD Robinson, DJ McCarthy, GK Smyth
Bioinformatics 26 (1), 139-140, 2010
178802010
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman, VJ Carey, DM Bates, B Bolstad, M Dettling, S Dudoit, ...
Genome biology 5 (10), R80, 2004
121092004
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
GK Smyth
Statistical applications in genetics and molecular biology 3 (1), Article 3, 2004
117972004
limma powers differential expression analyses for RNA-sequencing and microarray studies
ME Ritchie, B Phipson, D Wu, Y Hu, CW Law, W Shi, GK Smyth
Nucleic acids research 43 (7), e47, 2015
100162015
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Y Liao, GK Smyth, W Shi
Bioinformatics 30 (7), 923-930, 2014
58552014
Limma: linear models for microarray data
GK Smyth
Bioinformatics and computational biology solutions using R and Bioconductor …, 2005
57922005
Limma: linear models for microarray data user’s guide
GK Smyth, N Thorne, J Wettenhall
Bioconductor, limma package, 2005
5767*2005
Limma: linear models for microarray data
GK Smyth
Bioinformatics and computational biology solutions using R and Bioconductor …, 2005
57142005
Limma: linear models for microarray data
GK Smyth
Bioinformatics and computational biology solutions using R and Bioconductor …, 2005
57012005
Limma: linear models for microarray data
GK Smyth
Bioinformatics and computational biology solutions using R and Bioconductor …, 2005
57012005
Limma: linear models for microarray data
GK Smyth
Bioinformatics and computational biology solutions using R and Bioconductor …, 2005
57012005
Gene ontology analysis for RNA-seq: accounting for selection bias
MD Young, MJ Wakefield, GK Smyth, A Oshlack
Genome Biology 11, R14, 2010
31312010
Voom: precision weights unlock linear model analysis tools for RNA-seq read counts
CW Law, Y Chen, W Shi, GK Smyth
Genome Biology 15 (2), R29, 2014
26902014
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
DJ McCarthy, Y Chen, GK Smyth
Nucleic acids research 40 (10), 4288-4297, 2012
24432012
Generation of a functional mammary gland from a single stem cell
M Shackleton, F Vaillant, KJ Simpson, J Stingl, GK Smyth, ...
Nature 439 (7072), 84-88, 2006
21592006
Normalization of cDNA microarray data
GK Smyth, T Speed
Methods 31 (4), 265-273, 2003
21372003
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115-121, 2015
18582015
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote
Y Liao, GK Smyth, W Shi
Nucleic acids research 41 (10), e108, 2013
14552013
Use of within-array replicate spots for assessing differential expression in microarray experiments
GK Smyth, J Michaud, HS Scott
Bioinformatics 21 (9), 2067-2075, 2005
13642005
Aberrant luminal progenitors as the candidate target population for basal tumor development in BRCA1 mutation carriers
E Lim, F Vaillant, D Wu, NC Forrest, B Pal, AH Hart, ML Asselin-Labat, ...
Nature medicine 15 (8), 907-913, 2009
12752009
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