Evolution of enhanced innate immune evasion by SARS-CoV-2 LG Thorne, M Bouhaddou, AK Reuschl, L Zuliani-Alvarez, B Polacco, ... Nature 602 (7897), 487-495, 2022 | 275 | 2022 |
Mutations in SARS-CoV-2 variants of concern link to increased spike cleavage and virus transmission A Escalera, AS Gonzalez-Reiche, S Aslam, I Mena, M Laporte, RL Pearl, ... Cell host & microbe 30 (3), 373-387. e7, 2022 | 166* | 2022 |
CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes. M Gupta, CM Azumaya, M Moritz, S Pourmal, A Diallo, GE Merz, G Jang, ... Research square, 2021 | 70 | 2021 |
PCprophet: a framework for protein complex prediction and differential analysis using proteomic data A Fossati, C Li, F Uliana, F Wendt, F Frommelt, P Sykacek, M Heusel, ... Nature methods 18 (5), 520-527, 2021 | 39 | 2021 |
SARS-CoV-2 variants evolve convergent strategies to remodel the host response M Bouhaddou, AK Reuschl, BJ Polacco, LG Thorne, MR Ummadi, C Ye, ... Cell 186 (21), 4597-4614. e26, 2023 | 32* | 2023 |
Mapping specificity, cleavage entropy, allosteric changes and substrates of blood proteases in a high-throughput screen F Uliana, M Vizovišek, L Acquasaliente, R Ciuffa, A Fossati, F Frommelt, ... Nature communications 12 (1), 1693, 2021 | 17 | 2021 |
Toward comprehensive plasma proteomics by orthogonal protease digestion A Fossati, AL Richards, KH Chen, D Jaganath, A Cattamanchi, JD Ernst, ... Journal of proteome research 20 (8), 4031-4040, 2021 | 16 | 2021 |
System-Wide Profiling of Protein Complexes Via Size Exclusion Chromatography–Mass Spectrometry (SEC–MS) A Fossati, F Frommelt, F Uliana, C Martelli, M Vizovisek, L Gillet, B Collins, ... Shotgun Proteomics: Methods and Protocols, 269-294, 2021 | 11 | 2021 |
Next-generation proteomics for quantitative Jumbophage-bacteria interaction mapping A Fossati, D Mozumdar, C Kokontis, M Mèndez-Moran, E Nieweglowska, ... Nature Communications 14 (1), 5156, 2023 | 10* | 2023 |
Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets KM Haas, MJ McGregor, M Bouhaddou, BJ Polacco, EY Kim, TT Nguyen, ... Nature communications 14 (1), 6030, 2023 | 8 | 2023 |
Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans AC Teuscher, C Statzer, A Goyala, SA Domenig, I Schoen, M Hess, ... Nature Communications 15 (1), 276, 2024 | 7* | 2024 |
Rapid profiling of protein complex reorganization in perturbed systems I Bludau, C Nicod, C Martelli, P Xue, M Heusel, A Fossati, F Uliana, ... Journal of Proteome Research 22 (5), 1520-1536, 2023 | 7 | 2023 |
Phosphorylation‐linked complex profiling identifies assemblies required for Hippo signal integration F Uliana, R Ciuffa, R Mishra, A Fossati, F Frommelt, S Keller, M Mehnert, ... Molecular systems biology 19 (4), e11024, 2023 | 5* | 2023 |
Parallelized screening of virus accessory genes reveals diverse defense and counter-defense mechanisms S Silas, H Carion, KS Makarova, E Laderman, DS Godinez, M Johnson, ... | 3* | 2023 |
Multi-scale photocatalytic proximity labeling reveals cell surface neighbors on and between cells Z Lin, K Schaefer, I Lui, Z Yao, AA Fossati, DL Swaney, A Palar, A Sali, ... bioRxiv, 2023.10. 28.564055, 2023 | 3 | 2023 |
DIP-MS: ultra-deep interaction proteomics for the deconvolution of protein complexes F Frommelt, A Fossati, F Uliana, F Wendt, P Xue, M Heusel, B Wollscheid, ... Nature Methods, 1-13, 2024 | 2* | 2024 |
PCfun: a hybrid computational framework for systematic characterization of protein complex function VS Sharma, A Fossati, R Ciuffa, M Buljan, EG Williams, Z Chen, W Shao, ... Briefings in Bioinformatics 23 (4), bbac239, 2022 | 1 | 2022 |
Defining the constituents and functions of a lipid-based jumbo phage compartment D Mozumdar, A Fossati, E Stevenson, J Guan, ES Nieweglowska, S Rao, ... bioRxiv, 2024.03. 24.586471, 2024 | | 2024 |
In vivo protein turnover rates in varying oxygen tensions nominate MYBBP1A as a mediator of the hyperoxia response X Chen, AG Haribowo, AH Baik, A Fossati, E Stevenson, YR Chen, ... Science Advances 9 (49), eadj4884, 2023 | | 2023 |
SARS-CoV-2 Variants Evolve Convergent Strategies to Remodel the Host Response (preprint) M Bouhaddou, AK Reuschl, BJ Polacco, LG Thorne, MR Ummadi, C Ye, ... | | 2023 |