Vincent Daubin

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Eric TannierInria, IXXI, ENS Lyon, Univ LyonVerified email at inria.fr
Bastien BoussauLBBE, UMR 5558, CNRS researcher, Université de LyonVerified email at univ-lyon1.fr
Gergely J, SzöllősiOkinawa Institute of Science and Technology, OIST, Eötvös University, ELTE, HUN-REN ÖK ETIVerified email at oist.jp
Manolo GouyLaboratory of Biometry and Evolutionary Biology, CNRS, LyonVerified email at univ-lyon1.fr
Howard OchmanDepartment of Molecular Biosciences, University of Texas at AustinVerified email at austin.utexas.edu
Florent LassalleWellcome Sanger InstituteVerified email at sanger.ac.uk
Laurent DuretCNRS, université Lyon 1Verified email at univ-lyon1.fr
Nancy A. MoranProfessor of Integrative Biology, University of Texas at AustinVerified email at austin.utexas.edu
Sophie AbbyCNRS researcher, Université Grenoble AlpesVerified email at univ-grenoble-alpes.fr
Daniel MullerMCF université Claude Bernard Lyon 1Verified email at univ-lyon1.fr
Gabriel MaraisCNRSVerified email at cnrs.fr
Celine ScornavaccaInstitut des Sciences de l'Evolution, MontpellierVerified email at umontpellier.fr
Nicolas GaltierCNRS - Université MontpellierVerified email at umontpellier.fr
Mathieu GroussinAssociate Professor, University of KielVerified email at ikmb.uni-kiel.de
Vincent BerryLIRMM, Université Montpellier - CNRSVerified email at lirmm.fr
Jean-François DufayardChercheur en génomique comparative et phylogénie, CIRAD, MontpellierVerified email at cirad.fr
Vincent Ranwez Professor at Montpellier SupAgroVerified email at supagro.inra.fr
Claudine MEDIGUECEA/IG/Genoscope & CNRS UMR8030Verified email at genoscope.cns.fr
Lars ArvestadStockholm University; Dept of Mathematics, and Swedish e-Science Research CenterVerified email at math.su.se
Anthony M PooleSchool of Biological Sciences, University of Auckland, New ZealandVerified email at auckland.ac.nz

Vincent Daubin

cnrs

Verified email at univ-lyon1.fr

Evolutionary genomics


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Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia JM Aury, O Jaillon, L Duret, B Noel, C Jubin, BM Porcel, B Ségurens, ... Nature 444 (7116), 171-178, 2006	927	2006
From gene trees to organismal phylogeny in prokaryotes: the case of the γ-Proteobacteria E Lerat, V Daubin, NA Moran PLoS biology 1 (1), e19, 2003	525	2003
Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography P Normand, P Lapierre, LS Tisa, JP Gogarten, N Alloisio, E Bagnarol, ... Genome research 17 (1), 7-15, 2007	426	2007
Evolutionary origins of genomic repertoires in bacteria E Lerat, V Daubin, H Ochman, NA Moran PLoS biology 3 (5), e130, 2005	402	2005
A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history V Daubin, M Gouy, G Perriere Genome research 12 (7), 1080-1090, 2002	375	2002
Phylogenetics and the cohesion of bacterial genomes V Daubin, NA Moran, H Ochman Science 301 (5634), 829-832, 2003	330	2003
Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli V Daubin, H Ochman Genome research 14 (6), 1036-1042, 2004	324	2004
Genome-scale coestimation of species and gene trees B Boussau, GJ Szöllősi, L Duret, M Gouy, E Tannier, V Daubin Genome research 23 (2), 323-330, 2013	302	2013
The inference of gene trees with species trees GJ Szöllősi, E Tannier, V Daubin, B Boussau Systematic biology 64 (1), e42-e62, 2015	280	2015
Examining bacterial species under the specter of gene transfer and exchange H Ochman, E Lerat, V Daubin Proceedings of the National Academy of Sciences 102 (suppl_1), 6595-6599, 2005	273	2005
Dealing with incongruence in phylogenomic analyses N Galtier, V Daubin Philosophical Transactions of the Royal Society B: Biological Sciences 363 …, 2008	254	2008
GC-content evolution in bacterial genomes: the biased gene conversion hypothesis expands F Lassalle, S Périan, T Bataillon, X Nesme, L Duret, V Daubin PLoS genetics 11 (2), e1004941, 2015	242	2015
The source of laterally transferred genes in bacterial genomes V Daubin, E Lerat, G Perrière Genome biology 4, 1-12, 2003	227	2003
Efficient exploration of the space of reconciled gene trees GJ Szöllősi, W Rosikiewicz, B Boussau, E Tannier, V Daubin Systematic biology 62 (6), 901-912, 2013	209	2013
The origin of eukaryotes and their relationship with the Archaea: are we at a phylogenomic impasse? S Gribaldo, AM Poole, V Daubin, P Forterre, C Brochier-Armanet Nature Reviews Microbiology 8 (10), 743-752, 2010	193	2010
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations GJ Szöllősi, B Boussau, SS Abby, E Tannier, V Daubin Proceedings of the national academy of sciences 109 (43), 17513-17518, 2012	192	2012
Databases of homologous gene families for comparative genomics S Penel, AM Arigon, JF Dufayard, AS Sertier, V Daubin, L Duret, M Gouy, ... BMC bioinformatics 10, 1-13, 2009	187	2009
Models, algorithms and programs for phylogeny reconciliation JP Doyon, V Ranwez, V Daubin, V Berry Briefings in bioinformatics 12 (5), 392-400, 2011	184	2011
Reductive genome evolution at both ends of the bacterial population size spectrum B Batut, C Knibbe, G Marais, V Daubin Nature Reviews Microbiology 12 (12), 841-850, 2014	177	2014
Lateral gene transfer as a support for the tree of life SS Abby, E Tannier, M Gouy, V Daubin Proceedings of the National Academy of Sciences 109 (13), 4962-4967, 2012	151	2012

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