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Nikolaos Alachiotis
Nikolaos Alachiotis
University of Twente
Adresse e-mail validée de utwente.nl
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SweeD: Likelihood-based detection of selective sweeps in thousands of genomes
P Pavlidis, D Živković, A Stamatakis, N Alachiotis
Molecular Biology and Evolution, 2013
3882013
Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data
A Stamatakis, N Alachiotis
Bioinformatics 26 (12), i132-i139, 2010
151*2010
OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets
N Alachiotis, A Stamatakis, P Pavlidis
Bioinformatics 28 (17), 2274-2275, 2012
1332012
3D-Stacked Memory-Side Acceleration: Accelerator and System Design
Q Guo, N Alachiotis, B Akin, F Sadi, G Xu, TM Low, L Pileggi, JC Hoe, ...
2nd Workshop on Near Data Processing (WONDP) in conjunction with the 47th …, 2014
127*2014
A survey of methods and tools to detect recent and strong positive selection
P Pavlidis, N Alachiotis
Journal of Biological Research-Thessaloniki 24 (1), 7, 2017
1132017
Efficient PC-FPGA Communication over Gigabit Ethernet
N Alachiotis, SA Berger, A Stamatakis
Computer and Information Technology (CIT), 2010 IEEE 10th International …, 2010
1112010
RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors
N Alachiotis, P Pavlidis
Communications Biology 1 (1), 79, 2018
1052018
Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation
D Xu, P Pavlidis, RO Taskent, N Alachiotis, C Flanagan, M DeGiorgio, ...
Molecular Biology and Evolution 34 (10), 2704-2715, 2017
702017
Exploring FPGAs for accelerating the phylogenetic likelihood function
N Alachiotis, E Sotiriades, A Dollas, A Stamatakis
2009 IEEE International Symposium on Parallel & Distributed Processing, 1-8, 2009
602009
dReDBox: Materializing a full-stack rack-scale system prototype of a next-generation disaggregated datacenter
M Bielski, I Syrigos, K Katrinis, D Syrivelis, A Reale, D Theodoropoulos, ...
2018 Design, Automation & Test in Europe Conference & Exhibition (DATE …, 2018
412018
Efficient floating-point logarithm unit for FPGAs
N Alachiotis, A Stamatakis
2010 IEEE International Symposium on Parallel & Distributed Processing …, 2010
382010
A reconfigurable architecture for the phylogenetic likelihood function
N Alachiotis, A Stamatakis, E Sotiriades, A Dollas
Field Programmable Logic and Applications, 2009. FPL 2009. International …, 2009
312009
A versatile UDP/IP based PC↔ FPGA communication platform
N Alachiotis, SA Berger, A Stamatakis
2012 International Conference on Reconfigurable Computing and FPGAs, 1-6, 2012
302012
A generic vectorization scheme and a gpu kernel for the phylogenetic likelihood library
F Izquierdo-Carrasco, N Alachiotis, S Berger, T Flouri, SP Pissis, ...
2013 IEEE International Symposium on Parallel & Distributed Processing …, 2013
282013
FPGA acceleration of the phylogenetic parsimony kernel?
N Alachiotis, A Stamatakis
2011 21st International Conference on Field Programmable Logic and …, 2011
282011
Scalable linkage-disequilibrium-based selective sweep detection: a performance guide
N Alachiotis, P Pavlidis
GigaScience 5 (1), s13742-016-0114-9, 2016
252016
Accelerating phylogeny-aware short DNA read alignment with FPGAs
N Alachiotis, SA Berger, A Stamatakis
2011 IEEE 19th Annual International Symposium on Field-Programmable Custom …, 2011
232011
Coupling SIMD and SIMT Architectures to Boost Performance of a Phylogeny-aware Alignment Kernel
N Alachiotis, SA Berger, A Stamatakis
BMC Bioinformatics, 2012
212012
Detecting Positive Selection in Populations Using Genetic Data
A Koropoulis, N Alachiotis, P Pavlidis
Statistical Population Genomics, 87-123, 2020
182020
Population Genomics Insights into the First Wave of COVID-19
M Vasilarou, N Alachiotis, J Garefalaki, A Beloukas, P Pavlidis
Life 11 (2), 129, 2021
172021
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