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Romain Studer
Romain Studer
BenevolentAI
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Year
CATH: comprehensive structural and functional annotations for genome sequences
I Sillitoe, TE Lewis, A Cuff, S Das, P Ashford, NL Dawson, N Furnham, ...
Nucleic acids research 43 (D1), D376-D381, 2015
4752015
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
I Sillitoe, AL Cuff, BH Dessailly, NL Dawson, N Furnham, D Lee, JG Lees, ...
Nucleic Acids Research 41 (D1), D490-D498, 2013
2732013
Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs
AM Altenhoff, RA Studer, M Robinson-Rechavi, C Dessimoz
PLoS Computational Biology 8 (5), e1002514, 2012
2532012
Epithelial Sodium Transport and its control by aldosterone: The Story of our Internal Environment revisited
BC Rossier, ME Baker, RA Studer
Physiological Reviews 95 (1), 297-340, 2015
2352015
Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes
RA Studer, BH Dessailly, CA Orengo
Biochemical Journal 449 (3), 581-594, 2013
2232013
How confident can we be that orthologs are similar, but paralogs differ?
RA Studer, M Robinson-Rechavi
Trends in Genetics 25 (5), 210-216, 2009
1892009
Stability-activity tradeoffs constrain the adaptive evolution of RubisCO
RA Studer, PA Christin, MA Williams, CA Orengo
Proceedings of the National Academy of Sciences, 201310811, 2014
1642014
Vitellogenin underwent subfunctionalization to acquire caste and behavioral specific expression in the harvester ant Pogonomyrmex barbatus
M Corona, R Libbrecht, Y Wurm, O Riba-Grognuz, RA Studer, L Keller
PLoS Genet 9 (8), e1003730, 2013
1132013
Origin of the response to adrenal and sex steroids: Roles of promiscuity and co-evolution of enzymes and steroid receptors
ME Baker, DR Nelson, RA Studer
The Journal of steroid biochemistry and molecular biology 151, 12-24, 2015
922015
Evolution of protein phosphorylation across 18 fungal species
RA Studer, RA Rodriguez-Mias, KM Haas, JI Hsu, C Viéitez, C Solé, ...
Science 354 (6309), 229-232, 2016
912016
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes
RA Studer, S Penel, L Duret, M Robinson-Rechavi
Genome research 18 (9), 1393-1402, 2008
862008
Adaptive divergence of ancient gene duplicates in the avian MHC class II β
R Burri, N Salamin, RA Studer, A Roulin, L Fumagalli
Molecular biology and evolution 27 (10), 2360-2374, 2010
822010
Selectome update: quality control and computational improvements to a database of positive selection
S Moretti, B Laurenczy, WH Gharib, B Castella, A Kuzniar, H Schabauer, ...
Nucleic acids research 42 (D1), D917-D921, 2014
752014
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis
JG Lees, D Lee, RA Studer, NL Dawson, I Sillitoe, S Das, C Yeats, ...
Nucleic acids research 42 (D1), D240-D245, 2014
622014
Selectome: a database of positive selection
E Proux, RA Studer, S Moretti, M Robinson-Rechavi
Nucleic acids research 37 (suppl 1), D404-D407, 2009
532009
Evolution of the epithelial sodium channel and the sodium pump as limiting factors of aldosterone action on sodium transport
RA Studer, E Person, M Robinson-Rechavi, BC Rossier
Physiological Genomics 43 (13), 844-854, 2011
492011
Structural and evolutionary innovation of the heterodimerization interface between USP and the ecdysone receptor ECR in insects
T Iwema, A Chaumot, RA Studer, M Robinson-Rechavi, IML Billas, ...
Molecular biology and evolution 26 (4), 753-768, 2009
492009
Conserved phosphorylation hotspots in eukaryotic protein domain families
MJ Strumillo, M Oplova, C Vieitez, D Ochoa, M Shahraz, BP Busby, ...
bioRxiv, 391185, 2018
422018
Collembolan Transcriptomes Highlight Molecular Evolution of Hexapods and Provide Clues on the Adaptation to Terrestrial Life
A Faddeeva, RA Studer, K Kraaijeveld, D Sie, B Ylstra, J Mariën, ...
PloS one 10 (6), e0130600, 2015
332015
iProteinDB: an integrative database of Drosophila post-translational modifications
Y Hu, R Sopko, V Chung, RA Studer, SD Landry, D Liu, L Rabinow, ...
bioRxiv, 386268, 2018
272018
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