Rémy Nicolle
Rémy Nicolle
Carte d'Identité des Tumeurs, ligue nationale contre le cancer
Adresse e-mail validée de ligue-cancer.net
TitreCitée parAnnée
Deregulation of Rab and Rab Effector Genes in Bladder Cancer
JR Ho, E Chapeaublanc, L Kirkwood, R Nicolle, S Benhamou, T Lebret, ...
PloS one 7 (6), e39469, 2012
942012
Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes
G Lomberk, Y Blum, R Nicolle, A Nair, KS Gaonkar, L Marisa, A Mathison, ...
Nature communications 9 (1), 1978, 2018
412018
Stratification of pancreatic ductal adenocarcinomas based on tumor and microenvironment features
F Puleo, R Nicolle, Y Blum, J Cros, L Marisa, P Demetter, E Quertinmont, ...
Gastroenterology 155 (6), 1999-2013. e3, 2018
382018
Pancreatic Adenocarcinoma Therapeutic Targets Revealed by Tumor-Stroma Cross-Talk Analyses in Patient-Derived Xenografts
R Nicolle, Y Blum, L Marisa, C Loncle, O Gayet, V Moutardier, O Turrini, ...
Cell Reports 21 (9), 2458-2470, 2017
342017
Gene expression profiling of patient‐derived pancreatic cancer xenografts predicts sensitivity to the BET bromodomain inhibitor JQ1: implications for individualized medicine …
B Bian, M Bigonnet, O Gayet, C Loncle, A Maignan, M Gilabert, ...
EMBO Molecular Medicine 9 (4), 482-497, 2017
282017
COREGNET: reconstruction and integrated analysis of co-regulatory networks
R Nicolle, F Radvanyi, M Elati
Bioinformatics, btv305, 2015
272015
An FGFR3/MYC positive feedback loop provides new opportunities for targeted therapies in bladder cancers
M Mahe, F Dufour, H Neyret‐Kahn, A Moreno‐Vega, C Beraud, M Shi, ...
EMBO molecular medicine 10 (4), e8163, 2018
142018
PPAPDC1B and WHSC1L1 are common drivers of the 8p11-12 amplicon, not only in breast tumors but also in pancreatic adenocarcinomas and lung tumors
SF Mahmood, N Gruel, R Nicolle, E Chapeaublanc, O Delattre, ...
The American journal of pathology 183 (5), 1634-1644, 2013
132013
PreCisIon: PREdiction of CIS-regulatory elements improved by gene’s positION
M Elati, R Nicolle, I Junier, D Fernández, R Fekih, J Font, F Képès
Nucleic acids research 41 (3), 1406-1415, 2013
122013
Pepper: cytoscape app for protein complex expansion using protein–protein interaction networks
C Winterhalter, R Nicolle, A Louis, C To, F Radvanyi, M Elati
Bioinformatics 30 (23), 3419-3420, 2014
102014
Hybrid Method Inference for the Construction of Cooperative Regulatory Network in Human.
I Chebil, R Nicolle, G Santini, C Rouveirol, M Elati
IEEE transactions on nanobioscience, 2014
92014
Network transformation of gene expression for feature extraction
R Nicolle, M Elati, F Radvanyi
2012 11th International Conference on Machine Learning and Applications 1 …, 2012
92012
Prognostic Biomarkers in Pancreatic Cancer: Avoiding Errata When Using the TCGA Dataset
R Nicolle, J Raffenne, V Paradis, A Couvelard, A de Reynies, Y Blum, ...
Cancers 11 (1), 126, 2019
42019
Boosting binding sites prediction using gene’s positions
M Elati, R Fekih, R Nicolle, I Junier, J Hérisson, F Képès
International Workshop on Algorithms in Bioinformatics, 92-103, 2011
42011
A model for gene deregulation detection using expression data
T Picchetti, J Chiquet, M Elati, P Neuvial, R Nicolle, E Birmelé
BMC systems biology 9 (6), S6, 2015
32015
Multi-objective optimization for relevant sub-graph extraction
M Elati, C To, R Nicolle
International Conference on Learning and Intelligent Optimization, 104-109, 2013
22013
Different shades of pancreatic ductal adenocarcinoma, different paths towards precision therapeutic applications
S Martens, P Lefesvre, R Nicolle, AV Biankin, F Puleo, JL Van Laethem, ...
Annals of Oncology, 2019
12019
hENT1 Testing in Pancreatic Ductal Adenocarcinoma: Are We Ready? A Multimodal Evaluation of hENT1 Status
J Raffenne, R Nicolle, F Puleo, D Le Corre, C Boyez, R Marechal, ...
Cancers 11 (11), 1808, 2019
2019
Integrated molecular characterization of chondrosarcoma reveals critical determinants of disease progression
R Nicolle, M Ayadi, A Gomez-Brouchet, L Armenoult, G Banneau, ...
Nature communications 10 (1), 1-11, 2019
2019
SMAP: exploiting high-throughput sequencing data of patient derived xenografts
Y Blum, A de Reynies, N Dusetti, J Iovanna, L Marisa, R Nicolle
bioRxiv, 440008, 2018
2018
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