| Toward a human blood serum proteome: analysis by multidimensional separation coupled with mass spectrometry JN Adkins, SM Varnum, KJ Auberry, RJ Moore, NH Angell, RD Smith, ... Molecular & Cellular Proteomics 1 (12), 947-955, 2002 | 1103 | 2002 |
| The human plasma proteome: a nonredundant list developed by combination of four separate sources NL Anderson, M Polanski, R Pieper, T Gatlin, RS Tirumalai, TP Conrads, ... Molecular & Cellular Proteomics 3 (4), 311-326, 2004 | 1097 | 2004 |
| Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 … GS Omenn, DJ States, M Adamski, TW Blackwell, R Menon, H Hermjakob, ... Proteomics 5 (13), 3226-3245, 2005 | 933 | 2005 |
| Omic data from evolved E. coli are consistent with computed optimal growth from genome‐scale models NE Lewis, KK Hixson, TM Conrad, JA Lerman, P Charusanti, AD Polpitiya, ... Molecular systems biology 6 (1), 390, 2010 | 767 | 2010 |
| Activated ClpP kills persisters and eradicates a chronic biofilm infection BP Conlon, ES Nakayasu, LE Fleck, MD LaFleur, VM Isabella, K Coleman, ... Nature 503 (7476), 365-370, 2013 | 741 | 2013 |
| Persister formation in Staphylococcus aureus is associated with ATP depletion BP Conlon, SE Rowe, AB Gandt, AS Nuxoll, NP Donegan, EA Zalis, ... Nature microbiology 1 (5), 1-7, 2016 | 577 | 2016 |
| DAnTE: a statistical tool for quantitative analysis of-omics data AD Polpitiya, WJ Qian, N Jaitly, VA Petyuk, JN Adkins, DG Camp, ... Bioinformatics 24 (13), 1556-1558, 2008 | 465 | 2008 |
| Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics SJ Callister, RC Barry, JN Adkins, ET Johnson, W Qian, ... Journal of proteome research 5 (2), 277-286, 2006 | 465 | 2006 |
| An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis EA Kapp, F Schütz, LM Connolly, JA Chakel, JE Meza, CA Miller, D Fenyo, ... Proteomics 5 (13), 3475-3490, 2005 | 464 | 2005 |
| Utilizing human blood plasma for proteomic biomarker discovery JM Jacobs, JN Adkins, WJ Qian, T Liu, Y Shen, DG Camp, RD Smith Journal of proteome research 4 (4), 1073-1085, 2005 | 399 | 2005 |
| In silico method for modelling metabolism and gene product expression at genome scale JA Lerman, DR Hyduke, H Latif, VA Portnoy, NE Lewis, JD Orth, ... Nature communications 3 (1), 929, 2012 | 342 | 2012 |
| Distance restraints from crosslinking mass spectrometry: mining a molecular dynamics simulation database to evaluate lysine–lysine distances ED Merkley, S Rysavy, A Kahraman, RP Hafen, V Daggett, JN Adkins Protein science 23 (6), 747-759, 2014 | 284 | 2014 |
| Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data N Jaitly, A Mayampurath, K Littlefield, JN Adkins, GA Anderson, RD Smith BMC bioinformatics 10, 1-15, 2009 | 264 | 2009 |
| Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation N Gupta, S Tanner, N Jaitly, JN Adkins, M Lipton, R Edwards, M Romine, ... Genome research 17 (9), 1362-1377, 2007 | 236 | 2007 |
| VIPER: an advanced software package to support high-throughput LC-MS peptide identification ME Monroe, N Tolić, N Jaitly, JL Shaw, JN Adkins, RD Smith Bioinformatics 23 (15), 2021-2023, 2007 | 228 | 2007 |
| Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information K Petritis, LJ Kangas, B Yan, ME Monroe, EF Strittmatter, WJ Qian, ... Analytical chemistry 78 (14), 5026-5039, 2006 | 214 | 2006 |
| A statistical framework for protein quantitation in bottom-up MS-based proteomics Y Karpievitch, J Stanley, T Taverner, J Huang, JN Adkins, C Ansong, ... Bioinformatics 25 (16), 2028-2034, 2009 | 193 | 2009 |
| Robust algorithm for alignment of liquid chromatography− mass spectrometry analyses in an accurate mass and time tag data analysis pipeline N Jaitly, ME Monroe, VA Petyuk, TRW Clauss, JN Adkins, RD Smith Analytical chemistry 78 (21), 7397-7409, 2006 | 191 | 2006 |
| Model‐driven multi‐omic data analysis elucidates metabolic immunomodulators of macrophage activation A Bordbar, ML Mo, ES Nakayasu, AC Schrimpe‐Rutledge, YM Kim, ... Molecular systems biology 8 (1), 558, 2012 | 178 | 2012 |
| Immunoassay and antibody microarray analysis of the HUPO Plasma Proteome Project reference specimens: systematic variation between sample types and calibration of mass … BB Haab, BH Geierstanger, G Michailidis, F Vitzthum, S Forrester, R Okon, ... Proteomics 5 (13), 3278-3291, 2005 | 178 | 2005 |
Richard D SmithChief Scientist and Battelle Fellow, Biological Sciences Division, PNNLVerified email at pnnl.gov
