John E. Stone
John E. Stone
Senior Research Programmer, University of Illinois at Urbana-Champaign
Adresse e-mail validée de ks.uiuc.edu - Page d'accueil
Titre
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Année
GPU computing
JD Owens, M Houston, D Luebke, S Green, JE Stone, JC Phillips
Proceedings of the IEEE 96 (5), 879-899, 2008
25192008
OpenCL: A parallel programming standard for heterogeneous computing systems
JE Stone, D Gohara, G Shi
Computing in science & engineering 12 (3), 66-73, 2010
18052010
Accelerating molecular modeling applications with graphics processors
JE Stone, JC Phillips, PL Freddolino, DJ Hardy, LG Trabuco, K Schulten
Journal of Computational Chemistry 28 (16), 2618-2640, 2007
8472007
GPU-accelerated molecular modeling coming of age
JE Stone, DJ Hardy, IS Ufimtsev, K Schulten
Journal of Molecular Graphics and Modelling 29 (2), 116-125, 2010
4282010
An Efficient Library for Parallel Ray Tracing and Animation
JE Stone
University of Missouri-Rolla, 1998
357*1998
GPU clusters for high-performance computing
VV Kindratenko, JJ Enos, G Shi, MT Showerman, GW Arnold, JE Stone, ...
2009 IEEE International Conference on Cluster Computing and Workshops, 1-8, 2009
2962009
An asymmetric distributed shared memory model for heterogeneous parallel systems
I Gelado, JE Stone, J Cabezas, S Patel, N Navarro, WW Hwu
ACM SIGARCH Computer Architecture News 38 (1), 347-358, 2010
2422010
Adapting a message-driven parallel application to GPU-accelerated clusters
JC Phillips, JE Stone, K Schulten
SC'08: Proceedings of the 2008 ACM/IEEE Conference on Supercomputing, 1-9, 2008
2282008
A system for interactive molecular dynamics simulation
JE Stone, J Gullingsrud, K Schulten
Proceedings of the 2001 symposium on Interactive 3D graphics, 191-194, 2001
2132001
Fast Analysis of Molecular Dynamics Trajectories with Graphics Processing Units--Radial Distribution Function Histogramming
BG Levine, JE Stone, A Kohlmeyer
Journal of Computational Physics 230 (9), 3556-3569, 2011
1772011
GPU acceleration of cutoff pair potentials for molecular modeling applications
CI Rodrigues, DJ Hardy, JE Stone, K Schulten, WMW Hwu
Proceedings of the 5th conference on Computing frontiers, 273-282, 2008
1462008
Multilevel summation of electrostatic potentials using graphics processing units
DJ Hardy, JE Stone, K Schulten
Parallel Computing 35 (3), 164-177, 2009
1442009
Using VMD: an introductory tutorial
J Hsin, A Arkhipov, Y Yin, JE Stone, K Schulten
Current protocols in bioinformatics 24 (1), 5.7. 1-5.7. 48, 2008
1292008
Fast Visualization of Gaussian Density Surfaces for Molecular Dynamics and Particle System Trajectories
M Krone, J Stone, T Ertl, K Schulten
EuroVis-Short Papers, 67-71, 2012
1162012
Scalable molecular dynamics on CPU and GPU architectures with NAMD
JC Phillips, DJ Hardy, JDC Maia, JE Stone, JV Ribeiro, RC Bernardi, ...
The Journal of Chemical Physics 153 (4), 044130, 2020
1132020
Lattice microbes: High‐performance stochastic simulation method for the reaction‐diffusion master equation
E Roberts, JE Stone, Z Luthey‐Schulten
Journal of Computational Chemistry 34 (3), 245-255, 2013
1052013
Scientific Computing with Multicore and Accelerators
W Alvaro, J Kurzak, J Dongarra, S Tomov, R Nath, S Williams, N Bell, ...
82*
Molecular dynamics-based refinement and validation for sub-5 Å cryo-electron microscopy maps
A Singharoy, I Teo, R McGreevy, JE Stone, J Zhao, K Schulten
eLife 5, e16105, 2016
812016
In Scientific Computing with Multicore and Accelerators
JE Stone, DJ Hardy, B Isralewitz, K Schulten
Chapman & Hall/CRC Press, 2011
81*2011
QwikMD—Integrative Molecular Dynamics Toolkit for Novices and Experts
JV Ribeiro, RC Bernardi, T Rudack, JE Stone, JC Phillips, PL Freddolino, ...
Scientific reports 6, 26536, 2016
792016
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