| Circulating mRNAs and miRNAs as candidate markers for the diagnosis and prognosis of prostate cancer MF Souza, H Kuasne, MC Barros-Filho, HL Cilião, FA Marchi, PE Fuganti, ... PloS one 12 (9), e0184094, 2017 | 114 | 2017 |
| Pattern recognition analysis on long noncoding RNAs: a tool for prediction in plants TC Negri, WAL Alves, PH Bugatti, PTM Saito, DS Domingues, ... Briefings in bioinformatics 20 (2), 682-689, 2019 | 60 | 2019 |
| Non-coding transcription characterization and annotation: a guide and web resource for non-coding RNA databases AR Paschoal, V Maracaja-Coutinho, JC Setubal, ZLP Simões, ... RNA biology 9 (3), 274-282, 2012 | 52 | 2012 |
| Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma P Severino, LS Oliveira, FM Andreghetto, N Torres, O Curioni, PM Cury, ... BMC medical genomics 8, 1-15, 2015 | 45 | 2015 |
| PlanTE-MIR DB: a database for transposable element-related microRNAs in plant genomes AP R. Lorenzetti, GY A. de Antonio, AR Paschoal, DS Domingues Functional & integrative genomics 16, 235-242, 2016 | 42 | 2016 |
| TERL: classification of transposable elements by convolutional neural networks MHP da Cruz, DS Domingues, PTM Saito, AR Paschoal, PH Bugatti Briefings in bioinformatics 22 (3), bbaa185, 2021 | 34 | 2021 |
| Feature extraction approaches for biological sequences: a comparative study of mathematical features RP Bonidia, LDH Sampaio, DS Domingues, AR Paschoal, FM Lopes, ... Briefings in Bioinformatics, 2021 | 33 | 2021 |
| Noncoding RNAs databases: current status and trends V Maracaja-Coutinho, AR Paschoal, JC Caris-Maldonado, PV Borges, ... Computational biology of non-coding RNA: methods and protocols, 251-285, 2019 | 32 | 2019 |
| PlaNC-TE: a comprehensive knowledgebase of non-coding RNAs and transposable elements in plants DLF Pedro, APR Lorenzetti, DS Domingues, AR Paschoal Database: The Journal of Biological Databases and Curation, 1-7, 2018 | 25 | 2018 |
| mirtronDB: a mirtron knowledge base BHRD Fonseca, DS Domingues, AR Paschoal Bioinformatics 35 (6), 1-2, 2019 | 23* | 2019 |
| An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses TB Dos Santos, JDM Soares, JE Lima, JC Silva, ST Ivamoto, VY Baba, ... Functional & integrative genomics 19, 151-169, 2019 | 23 | 2019 |
| The nuclear and mitochondrial genomes of Frieseomelitta varia – a highly eusocial stingless bee (Meliponini) with a permanently sterile worker caste FC de Paula Freitas, AP Lourenço, FMF Nunes, AR Paschoal, FCP Abreu, ... BMC genomics 21 (1), 386, 2020 | 21 | 2020 |
| ceRNAs in plants: computational approaches and associated challenges for target mimic research AR Paschoal, I Lozada-Chávez, DS Domingues, PF Stadler Briefings in bioinformatics 19 (6), 1273-1289, 2018 | 21 | 2018 |
| High-throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research P Severino, LS Oliveira, N Torres, FM Andreghetto, ... BMC genomics 14, 1-15, 2013 | 18 | 2013 |
| Meta-Analysis of Aedes aegypti Expression Datasets: Comparing Virus Infection and Blood-Fed Transcriptomes to Identify Markers of Virus Presence KF Fukutani, JI Kasprzykowski, AR Paschoal, MS Gomes, A Barral, ... Frontiers in bioengineering and biotechnology 5, 84, 2018 | 17 | 2018 |
| Towards a better understanding of the Coffea Arabica genome structure. L Mueller, S Strickler, D Domingues, L Pereira, A Andrade, P Marraccini, ... In: INTERNATIONAL CONFERENCE ON COFFEE SCICENCE, 25., 2014, Armenia …, 2015 | 17 | 2015 |
| An atlas of plant transposable elements DLF Pedro, TS Amorim, A Varani, R Guyot, DS Domingues, AR Paschoal F1000Research 10, 2021 | 14 | 2021 |
| Inpactor2: a software based on deep learning to identify and classify LTR-retrotransposons in plant genomes S Orozco-Arias, L Humberto Lopez-Murillo, MS Candamil-Cortés, M Arias, ... Briefings in Bioinformatics 24 (1), bbac511, 2023 | 11 | 2023 |
| A novel decomposing model with evolutionary algorithms for feature selection in long non-coding rnas RP Bonidia, JS Machida, TC Negri, WAL Alves, AY Kashiwabara, ... IEEE Access 8, 181683-181697, 2020 | 10 | 2020 |
| Classification of transposable elements by convolutional neural networks MHP da Cruz, PTM Saito, AR Paschoal, PH Bugatti Artificial Intelligence and Soft Computing: 18th International Conference …, 2019 | 10 | 2019 |
Douglas Silva DominguesProfessor in Plant Molecular Genetics, University of São Paulo, ESALQ/USPVerified email at usp.br
