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Maxwell Zimmerman
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The SARS-CoV-2 nucleocapsid protein is dynamic, disordered, and phase separates with RNA
J Cubuk, JJ Alston, JJ Incicco, S Singh, MD Stuchell-Brereton, MD Ward, ...
Nature Communications 12 (1), 1-17, 2021
2052021
SARS-CoV-2 simulations go exascale to predict dramatic spike opening and cryptic pockets across the proteome
MI Zimmerman, JR Porter, MD Ward, S Singh, N Vithani, A Meller, ...
Nature chemistry 13 (7), 651-659, 2021
135*2021
Molecular structure of RADA16-I designer self-assembling peptide nanofibers
AR Cormier, X Pang, MI Zimmerman, HX Zhou, AK Paravastu
ACS nano 7 (9), 7562-7572, 2013
1302013
FAST Conformational Searches by Balancing Exploration/Exploitation Trade-Offs
MI Zimmerman, GR Bowman
Journal of chemical theory and computation 11 (12), 5747-5757, 2015
1182015
Antiparallel β-Sheet Structure within the C-Terminal Region of 42-Residue Alzheimer's Amyloid-β Peptides When They Form 150-kDa Oligomers
D Huang, MI Zimmerman, PK Martin, AJ Nix, TL Rosenberry, ...
Journal of molecular biology 427 (13), 2319-2328, 2015
762015
Prediction of New Stabilizing Mutations Based on Mechanistic Insights from Markov State Models
MI Zimmerman, KM Hart, CA Sibbald, TE Frederick, JR Jimah, ...
ACS central science 3 (12), 1311-1321, 2017
502017
Choice of adaptive sampling strategy impacts state discovery, transition probabilities, and the apparent mechanism of conformational changes
MI Zimmerman, JR Porter, X Sun, RR Silva, GR Bowman
Journal of chemical theory and computation 14 (11), 5459-5475, 2018
482018
Designing small molecules to target cryptic pockets yields both positive and negative allosteric modulators
KM Hart, KE Moeder, CMW Ho, MI Zimmerman, TE Frederick, ...
PloS one 12 (6), e0178678, 2017
422017
Cooperative changes in solvent exposure identify cryptic pockets, switches, and allosteric coupling
JR Porter, KE Moeder, CA Sibbald, MI Zimmerman, KM Hart, ...
Biophysical journal 116 (5), 818-830, 2019
402019
Enspara: Modeling molecular ensembles with scalable data structures and parallel computing
JR Porter, MI Zimmerman, GR Bowman
The Journal of Chemical Physics 150 (4), 044108, 2019
352019
Spatial and temporal alterations in protein structure by EGF regulate cryptic cysteine oxidation
JB Behring, S van der Post, AD Mooradian, MJ Egan, MI Zimmerman, ...
Science signaling 13 (615), eaay7315, 2020
322020
SARS-CoV-2 Nsp16 activation mechanism and a cryptic pocket with pan-coronavirus antiviral potential
N Vithani, MD Ward, MI Zimmerman, B Novak, JH Borowsky, S Singh, ...
Biophysical Journal 120 (14), 2880-2889, 2021
262021
Solid-state NMR Evidence for β-hairpin structure within MAX8 designer peptide nanofibers
SR Leonard, AR Cormier, X Pang, MI Zimmerman, HX Zhou, ...
Biophysical journal 105 (1), 222-230, 2013
242013
Deep learning the structural determinants of protein biochemical properties by comparing structural ensembles with DiffNets
MD Ward, MI Zimmerman, A Meller, M Chung, SJ Swamidass, ...
Nature Communications 12 (1), 1-12, 2021
18*2021
The Cap-Snatching SFTSV Endonuclease Domain Is an Antiviral Target
W Wang, WJ Shin, B Zhang, Y Choi, JS Yoo, MI Zimmerman, TE Frederick, ...
Cell Reports 30 (1), 153-163. e5, 2020
172020
Conformational distributions of isolated myosin motor domains encode their mechanochemical properties
JR Porter, A Meller, MI Zimmerman, MJ Greenberg, GR Bowman
Elife 9, e55132, 2020
152020
A cryptic pocket in Ebola VP35 allosterically controls RNA binding
MA Cruz, TE Frederick, U Mallimadugula, S Singh, N Vithani, ...
bioRxiv, 2020.02. 09.940510, 2020
132020
How to Run FAST Simulations
MI Zimmerman, GR Bowman
Methods in enzymology 578, 213-225, 2016
132016
Naturally Occurring Genetic Variants in the Oxytocin Receptor Alter Receptor Signaling Profiles
M Malik, MD Ward, Y Fang, JR Porter, MI Zimmerman, T Koelblen, M Roh, ...
ACS Pharmacology & Translational Science 4 (5), 1543-1555, 2021
12021
Apolipoprotein E4 has extensive conformational heterogeneity in lipid free and bound forms
MD Stuchell-Brereton, MI Zimmerman, JJ Miller, UL Mallimadugula, ...
bioRxiv, 2022
2022
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Articles 1–20