Sandrine Dudoit
Sandrine Dudoit
Division of Biostatistics and Department of Statistics, University of California, Berkeley
Verified email at - Homepage
Cited by
Cited by
Bioconductor: open software development for computational biology and bioinformatics
RC Gentleman, VJ Carey, DM Bates, B Bolstad, M Dettling, S Dudoit, ...
Genome biology 5, 1-16, 2004
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
YH Yang, S Dudoit, P Luu, DM Lin, V Peng, J Ngai, TP Speed
Nucleic acids research 30 (4), e15-e15, 2002
Bioinformatics and computational biology solutions using R and Bioconductor
R Gentleman, V Carey, W Huber, R Irizarry, S Dudoit
Springer Science & Business Media, 2005
Comparison of discrimination methods for the classification of tumors using gene expression data
S Dudoit, J Fridlyand, TP Speed
Journal of the American statistical association 97 (457), 77-87, 2002
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
S Dudoit, YH Yang, MJ Callow, TP Speed
Statistica sinica, 111-139, 2002
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
JH Bullard, E Purdom, KD Hansen, S Dudoit
BMC bioinformatics 11 (1), 1-13, 2010
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
K Street, D Risso, RB Fletcher, D Das, J Ngai, N Yosef, E Purdom, ...
BMC genomics 19, 1-16, 2018
Normalization of RNA-seq data using factor analysis of control genes or samples
D Risso, J Ngai, TP Speed, S Dudoit
Nature biotechnology 32 (9), 896-902, 2014
The developmental transcriptome of Drosophila melanogaster
BR Graveley, AN Brooks, JW Carlson, MO Duff, JM Landolin, L Yang, ...
Nature 471 (7339), 473-479, 2011
Multiple hypothesis testing in microarray experiments
S Dudoit, JP Shaffer, JC Boldrick
Statistical Science 18 (1), 71-103, 2003
Diversity, topographic differentiation, and positional memory in human fibroblasts
HY Chang, JT Chi, S Dudoit, C Bondre, M Van De Rijn, D Botstein, ...
Proceedings of the National Academy of Sciences 99 (20), 12877-12882, 2002
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia
DH Brann, T Tsukahara, C Weinreb, M Lipovsek, K Van den Berge, ...
Science advances 6 (31), eabc5801, 2020
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ...
Science 330 (6012), 1787-1797, 2010
GC-content normalization for RNA-Seq data
D Risso, K Schwartz, G Sherlock, S Dudoit
BMC bioinformatics 12, 1-17, 2011
Gene expression patterns in human liver cancers
X Chen, ST Cheung, S So, ST Fan, C Barry, J Higgins, KM Lai, J Ji, ...
Molecular biology of the cell 13 (6), 1929-1939, 2002
A prediction-based resampling method for estimating the number of clusters in a dataset
S Dudoit, J Fridlyand
Genome biology 3, 1-21, 2002
Survival ensembles
T Hothorn, P Bühlmann, S Dudoit, A Molinaro, MJ Van Der Laan
Biostatistics 7 (3), 355-373, 2006
Multiple testing procedures with applications to genomics
S Dudoit, MJ Van Der Laan, MJ van der Laan
Springer, 2008
Biases in Illumina transcriptome sequencing caused by random hexamer priming
KD Hansen, SE Brenner, S Dudoit
Nucleic acids research 38 (12), e131-e131, 2010
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ...
Nature methods 10 (12), 1177-1184, 2013
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