Mengjie Chen
Mengjie Chen
Verified email at uchicago.edu - Homepage
Title
Cited by
Cited by
Year
Tdrkh is essential for spermatogenesis and participates in primary piRNA biogenesis in the germline
JP Saxe, M Chen, H Zhao, H Lin
The EMBO journal 32 (13), 1869-1885, 2013
1192013
An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge
CA Brownstein, AH Beggs, N Homer, B Merriman, WY Timothy, ...
Genome biology 15 (3), 1-18, 2014
842014
Genomic analysis of oesophageal squamous-cell carcinoma identifies alcohol drinking-related mutation signature and genomic alterations
J Chang, W Tan, Z Ling, R Xi, M Shao, M Chen, Y Luo, Y Zhao, Y Liu, ...
Nature communications 8 (1), 1-11, 2017
732017
Robust covariance and scatter matrix estimation under Huber’s contamination model
M Chen, C Gao, Z Ren
The Annals of Statistics 46 (5), 1932-1960, 2018
702018
Novel HBsAg markers tightly correlate with occult HBV infection and strongly affect HBsAg detection
V Svicher, V Cento, M Bernassola, M Neumann-Fraune, F Van Hemert, ...
Antiviral research 93 (1), 86-93, 2012
692012
Intratumoral heterogeneity as a source of discordance in breast cancer biomarker classification
EH Allott, J Geradts, X Sun, SM Cohen, GR Zirpoli, T Khoury, W Bshara, ...
Breast Cancer Research 18 (1), 1-11, 2016
512016
Integrated RNA and DNA sequencing reveals early drivers of metastatic breast cancer
MB Siegel, X He, KA Hoadley, A Hoyle, JB Pearce, AL Garrett, S Kumar, ...
The Journal of clinical investigation 128 (4), 1371-1383, 2018
452018
Comprehensive analysis of The Cancer Genome Atlas reveals a unique gene and non-coding RNA signature of fibrolamellar carcinoma
TA Dinh, ECM Vitucci, E Wauthier, RP Graham, WA Pitman, T Oikawa, ...
Scientific reports 7, 44653, 2017
412017
A general decision theory for Huber’s -contamination model
M Chen, C Gao, Z Ren
Electronic Journal of Statistics 10 (2), 3752-3774, 2016
412016
Asymptotically normal and efficient estimation of covariate-adjusted Gaussian graphical model
M Chen, Z Ren, H Zhao, H Zhou
Journal of the American Statistical Association 111 (513), 394-406, 2016
312016
SomatiCA: identifying, characterizing and quantifying somatic copy number aberrations from cancer genome sequencing data
M Chen, M Gunel, H Zhao
PloS one 8 (11), e78143, 2013
302013
VIPER: variability-preserving imputation for accurate gene expression recovery in single-cell RNA sequencing studies
M Chen, X Zhou
Genome biology 19 (1), 1-15, 2018
292018
Sparse CCA via precision adjusted iterative thresholding
M Chen, C Gao, Z Ren, HH Zhou
arXiv preprint arXiv:1311.6186, 2013
282013
A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data
Z Xu, G Zhang, F Jin, M Chen, TS Furey, PF Sullivan, Z Qin, M Hu, Y Li
Bioinformatics 32 (5), 650-656, 2016
272016
The association between copy number aberration, DNA methylation and gene expression in tumor samples
W Sun, P Bunn, C Jin, P Little, V Zhabotynsky, CM Perou, DN Hayes, ...
Nucleic acids research 46 (6), 3009-3018, 2018
262018
Robust covariance matrix estimation via matrix depth
M Chen, C Gao, Z Ren
arXiv preprint arXiv:1506.00691, 2015
222015
Heritability estimation and differential analysis of count data with generalized linear mixed models in genomic sequencing studies
S Sun, J Zhu, S Mozaffari, C Ober, M Chen, X Zhou
Bioinformatics 35 (3), 487-496, 2019
192019
SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling
GO Silva, MB Siegel, LE Mose, JS Parker, W Sun, CM Perou, M Chen
Genome biology 18 (1), 1-14, 2017
162017
Controlling for confounding effects in single cell RNA sequencing studies using both control and target genes
M Chen, X Zhou
Scientific reports 7 (1), 1-14, 2017
162017
Detecting and understanding genetic and structural features in HIV-1 B subtype V3 underlying HIV-1 co-receptor usage
M Chen, V Svicher, A Artese, G Costa, C Alteri, F Ortuso, L Parrotta, Y Liu, ...
Bioinformatics 29 (4), 451-460, 2013
162013
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