Md. Shamsuzzoha Bayzid
Md. Shamsuzzoha Bayzid
Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology
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Whole-genome analyses resolve early branches in the tree of life of modern birds
ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde, C Li, SYW Ho, ...
Science 346 (6215), 1320-1331, 2014
ASTRAL: genome-scale coalescent-based species tree estimation
S Mirarab, R Reaz, MS Bayzid, T Zimmermann, MS Swenson, T Warnow
Bioinformatics 30 (17), i541-i548, 2014
Evaluating summary methods for multilocus species tree estimation in the presence of incomplete lineage sorting
S Mirarab, MS Bayzid, T Warnow
Systematic Biology 65 (3), 366-380, 2016
Statistical binning enables an accurate coalescent-based estimation of the avian tree
S Mirarab, MS Bayzid, B Boussau, T Warnow
Science 346 (6215), 1250463, 2014
Naive binning improves phylogenomic analyses
MS Bayzid, T Warnow
Bioinformatics 29 (18), 2277-2284, 2013
Accurate phylogenetic tree reconstruction from quartets: A heuristic approach
R Reaz, MS Bayzid, MS Rahman
PloS one 9 (8), e104008, 2014
Weighted Statistical Binning: enabling statistically consistent genome-scale phylogenetic analyses
BBTW Md. Shamsuzzoha Bayzid, Siavash Mirarab
PLoS ONE 10 (6), 2015
SAINT: self-attention augmented inception-inside-inception network improves protein secondary structure prediction
MR Uddin, S Mahbub, MS Rahman, MS Bayzid
Bioinformatics 36 (17), 4599-4608, 2020
Estimating optimal species trees from incomplete gene trees under deep coalescence
MS Bayzid, T Warnow
Journal of Computational Biology 19 (6), 591-605, 2012
Inferring optimal species trees under gene duplication and loss
MS Bayzid, S Mirarab, T Warnow
Biocomputing 2013, 250-261, 2013
Disk covering methods improve phylogenomic analyses
MS Bayzid, T Hunt, T Warnow
BMC genomics 15, 1-11, 2014
Discovering pairwise compatibility graphs
MN Yanhaona, MS Bayzid, MS Rahman
Discrete Mathematics, Algorithms and Applications 2 (04), 607-623, 2010
EGRET: edge aggregated graph attention networks and transfer learning improve protein–protein interaction site prediction
S Mahbub, MS Bayzid
Briefings in Bioinformatics 23 (2), bbab578, 2022
Machine learning based imputation techniques for estimating phylogenetic trees from incomplete distance matrices
A Bhattacharjee, MS Bayzid
BMC genomics 21 (1), 497, 2020
Gene tree parsimony for incomplete gene trees: addressing true biological loss
MS Bayzid, T Warnow
Algorithms for Molecular Biology 13, 1-12, 2018
STELAR: a statistically consistent coalescent-based species tree estimation method by maximizing triplet consistency
M Islam, K Sarker, T Das, R Reaz, MS Bayzid
BMC genomics 21, 1-13, 2020
Response to comment on “Statistical binning enables an accurate coalescent-based estimation of the avian tree”
S Mirarab, MS Bayzid, B Boussau, T Warnow
Science 350 (6257), 171-171, 2015
wQFM: highly accurate genome-scale species tree estimation from weighted quartets
M Mahbub, Z Wahab, R Reaz, MS Rahman, MS Bayzid
Bioinformatics 37 (21), 3734-3743, 2021
Biological computation and computational biology: survey, challenges, and discussion
Z Chelly Dagdia, P Avdeyev, MS Bayzid
Artificial Intelligence Review 54 (6), 4169-4235, 2021
Hmec: A heuristic algorithm for individual haplotyping with minimum error correction
MS Bayzid, MM Alam, A Mueen, MS Rahman
International Scholarly Research Notices 2013 (1), 291741, 2013
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