| The performance of the date-randomization test in phylogenetic analyses of time-structured virus data S Duchêne, D Duchêne, EC Holmes, SYW Ho Molecular Biology and Evolution 32 (7), 1895-1906, 2015 | 132 | 2015 |
| Bayesian molecular dating: opening up the black box L Bromham, S Duchêne, X Hua, AM Ritchie, DA Duchêne, SYW Ho Biological Reviews 93 (2), 1165-1191, 2018 | 113 | 2018 |
| Simulating and detecting autocorrelation of molecular evolutionary rates among lineages SYW Ho, S Duchêne, D Duchêne Molecular ecology resources 15 (4), 688-696, 2015 | 78 | 2015 |
| Analysis of phylogenomic tree space resolves relationships among marsupial families DA Duchêne, JG Bragg, S Duchêne, LE Neaves, S Potter, C Moritz, ... Systematic Biology 67 (3), 400-412, 2018 | 57 | 2018 |
| Rates of molecular evolution and diversification in plants: chloroplast substitution rates correlate with species-richness in the Proteaceae D Duchene, L Bromham BMC evolutionary biology 13 (1), 1-11, 2013 | 57 | 2013 |
| Bayesian evaluation of temporal signal in measurably evolving populations S Duchene, P Lemey, T Stadler, SYW Ho, DA Duchene, V Dhanasekaran, ... Molecular Biology and Evolution 37 (11), 3363-3379, 2020 | 52 | 2020 |
| Evaluating the adequacy of molecular clock models using posterior predictive simulations DA Duchêne, S Duchêne, EC Holmes, SYW Ho Molecular Biology and Evolution 32 (11), 2986-2995, 2015 | 45 | 2015 |
| Accounting for uncertainty in the evolutionary timescale of green plants through clock-partitioning and fossil calibration strategies Y Nie, CSP Foster, T Zhu, R Yao, DA Duchêne, SYW Ho, B Zhong Systematic biology 69 (1), 1-16, 2020 | 34 | 2020 |
| Evidence for concerted and mosaic brain evolution in dragon lizards D Hoops, M Vidal-García, JFP Ullmann, AL Janke, T Stait-Gardner, ... Brain, behavior and evolution 90 (3), 211-223, 2017 | 34 | 2017 |
| Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences D Duchêne, S Duchêne, SYW Ho Molecular ecology resources 15 (4), 785-794, 2015 | 34 | 2015 |
| New statistical criteria detect phylogenetic bias caused by compositional heterogeneity DA Duchêne, S Duchêne, SYW Ho Molecular Biology and Evolution 34 (6), 1529-1534, 2017 | 32 | 2017 |
| A simulation-based evaluation of tip-dating under the fossilized birth-death process A Luo, DA Duchêne, C Zhang, CD Zhu, SYW Ho Systematic Biology 69 (2), 325–344, 2020 | 31 | 2020 |
| Phylogenetic patterns in the geographic distributions of birds support the tropical conservatism hypothesis DA Duchêne, M Cardillo Global Ecology and Biogeography 24 (11), 1261-1268, 2015 | 28 | 2015 |
| Linking branch lengths across sets of loci provides the highest statistical support for phylogenetic inference DA Duchêne, KJ Tong, CSP Foster, S Duchêne, R Lanfear, SYW Ho Molecular Biology and Evolution 37 (4), 1202-1210, 2020 | 27 | 2020 |
| PhyloMAd: efficient assessment of phylogenomic model adequacy DA Duchêne, S Duchêne, SYW Ho Bioinformatics 34 (13), 2300-2301, 2018 | 26 | 2018 |
| A comparison of methods for estimating substitution rates from ancient DNA sequence data KJ Tong, DA Duchêne, S Duchêne, JL Geoghegan, SYW Ho BMC evolutionary biology 18 (1), 1-10, 2018 | 24 | 2018 |
| Phylodynamic model adequacy using posterior predictive simulations S Duchene, R Bouckaert, DA Duchene, T Stadler, AJ Drummond Systematic biology 68 (2), 358-364, 2019 | 23 | 2019 |
| Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts JA Rasmussen, KR Villumsen, DA Duchêne, LC Puetz, TO Delmont, ... Communications biology 4 (1), 1-10, 2021 | 20 | 2021 |
| Phylogenetic estimates of diversification rate are affected by molecular rate variation DA Duchêne, X Hua, L Bromham Journal of Evolutionary Biology 30 (10), 1884-1897, 2017 | 20 | 2017 |
| Cross-validation to select Bayesian hierarchical models in phylogenetics S Duchêne, DA Duchêne, F Di Giallonardo, JS Eden, JL Geoghegan, ... BMC evolutionary biology 16 (1), 1-8, 2016 | 20 | 2016 |
Simon HoProfessor of Molecular Evolution, University of SydneyVerified email at sydney.edu.au
