Aaron M Newman
Aaron M Newman
Assistant Professor of Biomedical Data Science, Stanford University
Adresse e-mail validée de stanford.edu - Page d'accueil
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Robust enumeration of cell subsets from tissue expression profiles
AM Newman, CL Liu, MR Green, AJ Gentles, W Feng, Y Xu, CD Hoang, ...
Nature Methods 12 (5), 453-457, 2015
34972015
The immune landscape of cancer
V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ...
Immunity 48 (4), 812-830. e14, 2018
16522018
The prognostic landscape of genes and infiltrating immune cells across human cancers
AJ Gentles*, AM Newman*(Co-First), CL Liu, SV Bratman, W Feng, D Kim, ...
Nature Medicine, 2015
16002015
An ultrasensitive method for quantitating circulating tumor DNA with broad patient coverage
AM Newman, SV Bratman, J To, JF Wynne, NCW Eclov, LA Modlin, ...
Nature Medicine, 2014
15922014
Integrated digital error suppression for improved detection of circulating tumor DNA
AM Newman, AF Lovejoy, DM Klass, DM Kurtz, JJ Chabon, F Scherer, ...
Nature biotechnology 34 (5), 547, 2016
6692016
Determining cell type abundance and expression from bulk tissues with digital cytometry
AM Newman, CB Steen, CL Liu, AJ Gentles, AA Chaudhuri, F Scherer, ...
Nature biotechnology 37 (7), 773-782, 2019
5902019
Profiling Tumor Infiltrating Immune Cells with CIBERSORT
B Chen, MS Khodadoust, CL Liu, AM Newman*(Co-Corresponding), ...
Cancer Systems Biology, 243-259, 2018
5332018
Circulating tumour DNA profiling reveals heterogeneity of EGFR inhibitor resistance mechanisms in lung cancer patients.
JJ Chabon, AD Simmons, AF Lovejoy, MS Esfahani, AM Newman, ...
Nature communications 7, 11815, 2016
4532016
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
J Morris*, L Apeltsin*, AM Newman*(Co-First), J Baumbach, T Wittkop, ...
BMC Bioinformatics 12 (1), 436, 2011
4222011
Identification and isolation of a dermal lineage with intrinsic fibrogenic potential
Y Rinkevich, GG Walmsley, MS Hu, ZN Maan, AM Newman, M Drukker, ...
Science 348 (6232), aaa2151, 2015
3992015
Early detection of molecular residual disease in localized lung cancer by circulating tumor DNA profiling
AA Chaudhuri, JJ Chabon, AF Lovejoy, AM Newman, H Stehr, TD Azad, ...
Cancer discovery 7 (12), 1394-1403, 2017
3532017
The genome sequence of the colonial chordate, Botryllus schlosseri
A Voskoboynik, NF Neff, D Sahoo, AM Newman, D Pushkarev, W Koh, ...
eLife 2, 2013
2722013
Distinct biological subtypes and patterns of genome evolution in lymphoma revealed by circulating tumor DNA
F Scherer*, DM Kurtz*, AM Newman*(Co-First), H Stehr, AFM Craig, ...
Science Translational Medicine 8 (364), 364ra155-364ra155, 2016
2492016
Lab-specific gene expression signatures in pluripotent stem cells
AM Newman, JB Cooper
Cell Stem Cell 7 (2), 258-262, 2010
2492010
Systems-level analysis of age-related macular degeneration reveals global biomarkers and phenotype-specific functional networks
AM Newman, NB Gallo, LS Hancox, NJ Miller, CM Radeke, MA Maloney, ...
Genome Medicine 4 (2), 16-16, 2012
1912012
Antigen presentation profiling reveals recognition of lymphoma immunoglobulin neoantigens
MS Khodadoust, N Olsson, LE Wagar, OAW Haabeth, B Chen, ...
Nature 543 (7647), 723-727, 2017
1822017
In vivo clonal analysis reveals lineage-restricted progenitor characteristics in mammalian kidney development, maintenance, and regeneration
Y Rinkevich, DT Montoro, H Contreras-Trujillo, O Harari-Steinberg, ...
Cell reports 7 (4), 1270-1283, 2014
1772014
Role of KEAP1/NRF2 and TP53 Mutations in Lung Squamous Cell Carcinoma Development and Radiation Resistance
Y Jeong, NT Hoang, A Lovejoy, H Stehr, AM Newman, AJ Gentles, ...
Cancer Discovery, CD-16-0127, 2016
1722016
Circulating Tumor DNA Measurements As Early Outcome Predictors in Diffuse Large B-Cell Lymphoma
DM Kurtz, F Scherer, MC Jin, J Soo, AFM Craig, MS Esfahani, JJ Chabon, ...
Journal of Clinical Oncology, JCO. 2018.78. 5246, 2018
1712018
Early B cell changes predict autoimmunity following combination immune checkpoint blockade
R Das, N Bar, M Ferreira, AM Newman, L Zhang, JK Bailur, A Bacchiocchi, ...
The Journal of clinical investigation 128 (2), 2018
1542018
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