Srikar Chamala
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The tomato genome sequence provides insights into fleshy fruit evolution
xx Tomato Genome Consortium
Nature 485 (7400), 635, 2012
25232012
The Amborella genome and the evolution of flowering plants
VA Albert, WB Barbazuk, CW Depamphilis, JP Der, J Leebens-Mack, ...
Science 342 (6165), 1241089, 2013
4402013
Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin
RJA Buggs, S Chamala, W Wu, JA Tate, PS Schnable, DE Soltis, ...
Current biology 22 (3), 248-252, 2012
1502012
Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next‐generation sequencing and Sequenom iPLEX …
RJA Buggs, S Chamala, WEI Wu, LU Gao, GD May, PS Schnable, ...
Molecular ecology 19, 132-146, 2010
1272010
The mammalian LINC complex regulates genome transcriptional responses to substrate rigidity
SG Alam, Q Zhang, N Prasad, Y Li, S Chamala, R Kuchibhotla, ...
Scientific reports 6 (1), 1-11, 2016
1002016
Assembly and validation of the genome of the nonmodel basal angiosperm Amborella
S Chamala, AS Chanderbali, JP Der, T Lan, B Walts, VA Albert, ...
Science 342 (6165), 1516-1517, 2013
1002013
Next‐generation sequencing and genome evolution in allopolyploids
RJA Buggs, S Renny‐Byfield, M Chester, IE Jordon‐Thaden, LF Viccini, ...
American Journal of Botany 99 (2), 372-382, 2012
892012
Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants
S Chamala, G Feng, C Chavarro, WB Barbazuk
Frontiers in bioengineering and biotechnology 3, 33, 2015
872015
MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes
S Chamala, N García, GT Godden, V Krishnakumar, IE Jordon‐Thaden, ...
Applications in plant sciences 3 (4), 1400115, 2015
862015
The potential of genomics in plant systematics
DE Soltis, MA Gitzendanner, G Stull, M Chester, A Chanderbali, ...
Taxon 62 (5), 886-898, 2013
632013
The avocado genome informs deep angiosperm phylogeny, highlights introgressive hybridization, and reveals pathogen-influenced gene space adaptation
M Rendón-Anaya, E Ibarra-Laclette, A Méndez-Bravo, T Lan, C Zheng, ...
Proceedings of the National Academy of Sciences 116 (34), 17081-17089, 2019
612019
Making next-generation sequencing work for you: approaches and practical considerations for marker development and phylogenetics
GT Godden, IE Jordon-Thaden, S Chamala, AA Crowl, N García, ...
Plant Ecology & Diversity 5 (4), 427-450, 2012
452012
Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae)
N García, RA Folk, AW Meerow, S Chamala, MA Gitzendanner, ...
Molecular Phylogenetics and Evolution 111, 231-247, 2017
442017
Potential use of low-copy nuclear genes in DNA barcoding: a comparison with plastid genes in two Hawaiian plant radiations
Y Pillon, J Johansen, T Sakishima, S Chamala, WB Barbazuk, ...
BMC evolutionary biology 13 (1), 1-11, 2013
442013
The Early Stages of Polyploidy: Rapid and Repeated Evolution in Tragopogon
DE Soltis, RJA Buggs, WB Barbazuk, S Chamala, M Chester, ...
Polyploidy and genome evolution, 271-292, 2012
372012
A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure
A Zuccolo, JE Bowers, JC Estill, Z Xiong, M Luo, A Sebastian, ...
Genome Biology 12 (5), R48, 2011
352011
A genome-enabled, high-throughput, and multiplexed fingerprinting platform for strawberry (Fragaria L.)
A Chambers, S Carle, W Njuguna, S Chamala, N Bassil, VM Whitaker, ...
Molecular breeding 31 (3), 615-629, 2013
332013
Validation of reference transcripts in strawberry (Fragaria spp.)
MA Clancy, HG Rosli, S Chamala, WB Barbazuk, PM Civello, KM Folta
Molecular genetics and genomics 288 (12), 671-681, 2013
312013
A consensus genetic map for Pinus taeda and Pinus elliottii and extent of linkage disequilibrium in two genotype-phenotype discovery populations of Pinus taeda
JW Westbrook, VE Chhatre, LS Wu, S Chamala, LG Neves, P Muñoz, ...
G3: Genes, Genomes, Genetics 5 (8), 1685-1694, 2015
292015
A transcript accounting from diverse tissues of a cultivated strawberry
KMC Folta, MA Chamala, S Brunings, AM Dhingra, A Gomide, ...
The Plant Genome 3 (2), 90, 2010
292010
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