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David Ritchie
David Ritchie
Senior Researcher at INRIA Nancy
Adresse e-mail validée de inria.fr - Page d'accueil
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Protein docking using spherical polar Fourier correlations
DW Ritchie, GJL Kemp
Proteins: Structure, Function, and Bioinformatics 39 (2), 178-194, 2000
7072000
HexServer: an FFT-based protein docking server powered by graphics processors
G Macindoe, L Mavridis, V Venkatraman, MD Devignes, DW Ritchie
Nucleic acids research 38 (suppl_2), W445-W449, 2010
6192010
Ultra-fast FFT protein docking on graphics processors
DW Ritchie, V Venkatraman
Bioinformatics 26 (19), 2398-2405, 2010
3772010
Recent progress and future directions in protein-protein docking
DW Ritchie
Current protein and peptide science 9 (1), 1-15, 2008
3722008
Docking essential dynamics eigenstructures
D Mustard, DW Ritchie
Proteins: Structure, function, and bioinformatics 60 (2), 269-274, 2005
2792005
Evaluation of protein docking predictions using Hex 3.1 in CAPRI rounds 1 and 2
DW Ritchie
Proteins: Structure, Function, and Bioinformatics 52 (1), 98-106, 2003
2662003
Fast computation, rotation, and comparison of low resolution spherical harmonic molecular surfaces
DW Ritchie, GJL Kemp
Journal of Computational Chemistry 20 (4), 383-395, 1999
2401999
Accelerating and focusing protein–protein docking correlations using multi-dimensional rotational FFT generating functions
DW Ritchie, D Kozakov, S Vajda
Bioinformatics 24 (17), 1865-1873, 2008
2362008
Terminating eukaryote translation: domain 1 of release factor eRF1 functions in stop codon recognition
G Bertram, HA Bell, DW Ritchie, G Fullerton, I Stansfield
Rna 6 (9), 1236-1247, 2000
2092000
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
2022019
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1432016
Comprehensive comparison of ligand-based virtual screening tools against the DUD data set reveals limitations of current 3D methods
V Venkatraman, VI Pérez-Nueno, L Mavridis, DW Ritchie
Journal of chemical information and modeling 50 (12), 2079-2093, 2010
1292010
Protein docking using case‐based reasoning
AW Ghoorah, MD Devignes, M Smaïl‐Tabbone, DW Ritchie
Proteins: Structure, Function, and Bioinformatics 81 (12), 2150-2158, 2013
1062013
Comparison of Ligand-Based and Receptor-Based Virtual Screening of HIV Entry Inhibitors for the CXCR4 and CCR5 Receptors Using 3D Ligand Shape Matching and Ligand− Receptor Docking
VI Pérez-Nueno, DW Ritchie, O Rabal, R Pascual, JI Borrell, J Teixidó
Journal of chemical information and modeling 48 (3), 509-533, 2008
842008
Toward high throughput 3D virtual screening using spherical harmonic surface representations
L Mavridis, BD Hudson, DW Ritchie
Journal of chemical information and modeling 47 (5), 1787-1796, 2007
822007
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
732019
High-order analytic translation matrix elements for real-space six-dimensional polar Fourier correlations
DW Ritchie
Journal of applied crystallography 38 (5), 808-818, 2005
712005
Blind prediction of interfacial water positions in CAPRI
MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ...
Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014
562014
Flexible protein docking refinement using pose‐dependent normal mode analysis
V Venkatraman, DW Ritchie
Proteins: Structure, Function, and Bioinformatics 80 (9), 2262-2274, 2012
552012
Discovery of novel HIV entry inhibitors for the CXCR4 receptor by prospective virtual screening
VI Pérez-Nueno, S Pettersson, DW Ritchie, JI Borrell, J Teixido
Journal of chemical information and modeling 49 (4), 810-823, 2009
522009
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