Mihaela Pertea
Mihaela Pertea
Associate Professor, Johns Hopkins University
Verified email at jhu.edu - Homepage
Title
Cited by
Cited by
Year
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
GI Arabidopsis
Nature 408 (6814), 796, 2000
94942000
Genome sequence of the human malaria parasite Plasmodium falciparum
MJ Gardner, N Hall, E Fung, O White, M Berriman, RW Hyman, JM Carlton, ...
Nature 419 (6906), 498-511, 2002
47212002
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
M Pertea, GM Pertea, CM Antonescu, TC Chang, JT Mendell, SL Salzberg
Nature biotechnology 33 (3), 290-295, 2015
24162015
The ENCODE (ENCyclopedia of DNA elements) project
ENCODE Project Consortium
Science 306 (5696), 636-640, 2004
17082004
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
M Pertea, D Kim, GM Pertea, JT Leek, SL Salzberg
Nature protocols 11 (9), 1650, 2016
14852016
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ...
Nature 438 (7071), 1151-1156, 2005
13892005
Genome sequence of Aedes aegypti, a major arbovirus vector
V Nene, JR Wortman, D Lawson, B Haas, C Kodira, ZJ Tu, B Loftus, Z Xi, ...
Science 316 (5832), 1718-1723, 2007
11432007
The genome of the blood fluke Schistosoma mansoni
M Berriman, BJ Haas, PT LoVerde, RA Wilson, GP Dillon, GC Cerqueira, ...
Nature 460 (7253), 352-358, 2009
10322009
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ...
Genome biology 9 (1), R7, 2008
9462008
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis
JM Carlton, RP Hirt, JC Silva, AL Delcher, M Schatz, Q Zhao, JR Wortman, ...
Science 315 (5809), 207-212, 2007
8532007
Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii
JM Carlton, SV Angiuoli, BB Suh, TW Kooij, M Pertea, JC Silva, ...
Nature 419 (6906), 512-519, 2002
8362002
The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans
BJ Loftus, E Fung, P Roncaglia, D Rowley, P Amedeo, D Bruno, ...
Science 307 (5713), 1321-1324, 2005
7552005
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
WH Majoros, M Pertea, SL Salzberg
Bioinformatics 20 (16), 2878-2879, 2004
7192004
Draft genome of the filarial nematode parasite Brugia malayi
E Ghedin, S Wang, D Spiro, E Caler, Q Zhao, J Crabtree, JE Allen, ...
Science 317 (5845), 1756-1760, 2007
6432007
Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum
MJ Gardner, H Tettelin, DJ Carucci, LM Cummings, L Aravind, EV Koonin, ...
Science 282 (5391), 1126-1132, 1998
5581998
GeneSplicer: a new computational method for splice site prediction
M Pertea, X Lin, SL Salzberg
Nucleic acids research 29 (5), 1185-1190, 2001
5562001
Broad CTL response is required to clear latent HIV-1 due to dominance of escape mutations
K Deng, M Pertea, A Rongvaux, L Wang, CM Durand, G Ghiaur, J Lai, ...
Nature 517 (7534), 381-385, 2015
4112015
Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes
MJ Gardner, R Bishop, T Shah, EP De Villiers, JM Carlton, N Hall, Q Ren, ...
Science 309 (5731), 134-137, 2005
3442005
Between a chicken and a grape: estimating the number of human genes
M Pertea, SL Salzberg
Genome biology 11 (5), 206, 2010
2732010
In-depth view of structure, activity, and evolution of rice chromosome 10
Rice Chromosome 10 Sequencing Consortium
Science 300 (5625), 1566-1569, 2003
2582003
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