Snoep JL
Snoep JL
Stellenbosch University; Manchester University; Vrije Universiteit Amsterdam
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BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
N Le Novere, B Bornstein, A Broicher, M Courtot, M Donizelli, H Dharuri, ...
Nucleic acids research 34 (suppl_1), D689-D691, 2006
The systems biology graphical notation
N Le Novere, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735-741, 2009
Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry
B Teusink, J Passarge, CA Reijenga, E Esgalhado, CC Van der Weijden, ...
European Journal of Biochemistry 267 (17), 5313-5329, 2000
Minimum information requested in the annotation of biochemical models (MIRIAM)
N Le Novère, A Finney, M Hucka, US Bhalla, F Campagne, ...
Nature biotechnology 23 (12), 1509-1515, 2005
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
C Li, M Donizelli, N Rodriguez, H Dharuri, L Endler, V Chelliah, L Li, E He, ...
BMC systems biology 4 (1), 1-14, 2010
Web-based kinetic modelling using JWS Online
BG Olivier, JL Snoep
Bioinformatics 20 (13), 2143-2144, 2004
The steady-state internal redox state (NADH/NAD) reflects the external redox state and is correlated with catabolic adaptation in Escherichia coli
MR De Graef, S Alexeeva, JL Snoep, MJT de Mattos
Journal of bacteriology 181 (8), 2351-2357, 1999
The glycolytic flux in Escherichia coli is controlled by the demand for ATP
BJ Koebmann, HV Westerhoff, JL Snoep, D Nilsson, PR Jensen
Journal of bacteriology 184 (14), 3909-3916, 2002
Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysisThe GenBank accession number for the …
MHN Hoefnagel, MJC Starrenburg, DE Martens, J Hugenholtz, ...
Microbiology 148 (4), 1003-1013, 2002
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language
D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ...
BMC systems biology 5 (1), 1-10, 2011
Isolation, characterization, and physiological role of the pyruvate dehydrogenase complex and alpha-acetolactate synthase of Lactococcus lactis subsp. lactis bv. diacetylactis.
JL Snoep, MJT De Mattos, MJ Starrenburg, J Hugenholtz
Journal of bacteriology 174 (14), 4838-4841, 1992
Construction and characterization of an effector strain of Streptococcus mutans for replacement therapy of dental caries
JD Hillman, TA Brooks, SM Michalek, CC Harmon, JL Snoep, ...
Infection and immunity 68 (2), 543-549, 2000
Towards building the silicon cell: a modular approach
JL Snoep, F Bruggeman, BG Olivier, HV Westerhoff
Biosystems 83 (2-3), 207-216, 2006
Transduction of intracellular and intercellular dynamics in yeast glycolytic oscillations
J Wolf, J Passarge, OJG Somsen, JL Snoep, R Heinrich, HV Westerhoff
Biophysical journal 78 (3), 1145-1153, 2000
Protein burden in Zymomonas mobilis: negative flux and growth control due to overproduction of glycolytic enzymes
JL Snoep, LP Yomano, HV Westerhoff, LO Ingram
Microbiology 141 (9), 2329-2337, 1995
Minimum information about a simulation experiment (MIASE)
D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ...
PLoS computational biology 7 (4), e1001122, 2011
DNA supercoiling in Escherichia coli is under tight and subtle homeostatic control, involving gene‐expression and metabolic regulation of both topoisomerase I …
JL Snoep, CC van der Weijden, HW Andersen, HV Westerhoff, PR Jensen
European Journal of Biochemistry 269 (6), 1662-1669, 2002
Role of hexose transport in control of glycolytic flux in Saccharomyces cerevisiae
K Elbing, C Larsson, RM Bill, E Albers, JL Snoep, E Boles, S Hohmann, ...
Applied and environmental microbiology 70 (9), 5323-5330, 2004
DNA supercoiling depends on the phosphorylation potential in Escherichia coli
M van Workum, SJM van Dooren, N Oldenburg, D Molenaar, PR Jensen, ...
Molecular microbiology 20 (2), 351-360, 1996
Involvement of pyruvate dehydrogenase in product formation in pyruvate-limited anaerobic chemostat cultures of Enterococcus faecalis NCTC 775
JL Snoep, MJT de Mattos, PW Postma, OM Neijssel
Archives of microbiology 154 (1), 50-55, 1990
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