Valentina Boeva
Valentina Boeva
Assistant Prof., ETH Zürich, Department of Computer Science
Adresse e-mail validée de inf.ethz.ch - Page d'accueil
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Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data
V Boeva, T Popova, K Bleakley, P Chiche, J Cappo, G Schleiermacher, ...
Bioinformatics 28 (3), 423-425, 2012
5712012
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization
V Boeva, A Zinovyev, K Bleakley, JP Vert, I Janoueix-Lerosey, O Delattre, ...
Bioinformatics 27 (2), 268-269, 2011
2572011
SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data
B Zeitouni, V Boeva, I Janoueix-Lerosey, S Loeillet, P Legoix-Né, ...
Bioinformatics 26 (15), 1895-1896, 2010
2162010
Jarid2 Is Implicated in the Initial Xist-Induced Targeting of PRC2 to the Inactive X Chromosome
ST da Rocha, V Boeva, M Escamilla-Del-Arenal, K Ancelin, C Granier, ...
Molecular Cell 53 (2), 301-316, 2014
2142014
Computational pan-genomics: status, promises and challenges
Computational Pan-Genomics Consortium
Briefings in Bioinformatics, bbw089, 2016
1692016
Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries
V Boeva, C Louis-Brennetot, A Peltier, S Durand, C Pierre-Eugène, ...
Nature genetics 49 (9), 1408, 2017
1642017
Deep and wide digging for binding motifs in ChIP-Seq data
IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev
Bioinformatics 26 (20), 2622-2623, 2010
1572010
The oncogenic EWS-FLI1 protein binds in vivo GGAA microsatellite sequences with potential transcriptional activation function
N Guillon, F Tirode, V Boeva, A Zynovyev, E Barillot, O Delattre
PLoS One 4 (3), e4932, 2009
1472009
Chimeric EWSR1-FLI1 regulates the Ewing sarcoma susceptibility gene EGR2 via a GGAA microsatellite
TGP Grünewald, V Bernard, P Gilardi-Hebenstreit, V Raynal, D Surdez, ...
Nature genetics 47 (9), 1073-1078, 2015
1172015
Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression
V Boeva, M Regnier, D Papatsenko, V Makeev
Bioinformatics 22 (6), 676-684, 2006
1062006
Changes in correlation between promoter methylation and gene expression in cancer
M Moarii, V Boeva, JP Vert, F Reyal
BMC genomics 16 (1), 873, 2015
972015
De novo motif identification improves the accuracy of predicting transcription factor binding sites in ChIP-Seq data analysis
V Boeva, D Surdez, N Guillon, F Tirode, AP Fejes, O Delattre, E Barillot
Nucleic acids research 38 (11), e126-e126, 2010
792010
Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data
V Boeva, T Popova, M Lienard, S Toffoli, M Kamal, C Le Tourneau, ...
Bioinformatics 30 (24), 3443-3450, 2014
782014
Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis
SK Sieberts, F Zhu, J García-García, E Stahl, A Pratap, G Pandey, ...
Nature communications 7, 12460, 2016
772016
Ovarian cancers harboring inactivating mutations in CDK12 display a distinct genomic instability pattern characterized by large tandem duplications
T Popova, E Manié, V Boeva, A Battistella, O Goundiam, NK Smith, ...
Cancer research 76 (7), 1882-1891, 2016
722016
Analysis of genomic sequence motifs for deciphering transcription factor binding and transcriptional regulation in eukaryotic cells
V Boeva
Frontiers in genetics 7, 24, 2016
692016
Breakpoint features of genomic rearrangements in neuroblastoma with unbalanced translocations and chromothripsis
V Boeva, S Jouannet, R Daveau, V Combaret, C Pierre-Eugene, A Cazes, ...
PLoS One 8 (8), e72182, 2013
632013
Learning smoothing models of copy number profiles using breakpoint annotations
TD Hocking, G Schleiermacher, I Janoueix-Lerosey, V Boeva, J Cappo, ...
BMC bioinformatics 14 (1), 164, 2013
612013
Characterization of rearrangements involving the ALK gene reveals a novel truncated form associated with tumor aggressiveness in neuroblastoma
A Cazes, C Louis-Brennetot, P Mazot, F Dingli, B Lombard, V Boeva, ...
Cancer Research 73 (1), 195-204, 2013
502013
FUN-LDA: A latent Dirichlet allocation model for predicting tissue-specific functional effects of noncoding variation: methods and applications
D Backenroth, Z He, K Kiryluk, V Boeva, L Pethukova, E Khurana, ...
The American Journal of Human Genetics 102 (5), 920-942, 2018
462018
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