Chenfeng He
Chenfeng He
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High-throughput determination of the antigen specificities of T cell receptors in single cells
SQ Zhang, KY Ma, AA Schonnesen, M Zhang, C He, E Sun, CM Williams, ...
Nature biotechnology 36 (12), 1156-1159, 2018
General model for treating short-range electrostatic penetration in a molecular mechanics force field
Q Wang, JA Rackers, C He, R Qi, C Narth, L Lagardere, N Gresh, ...
Journal of chemical theory and computation 11 (6), 2609-2618, 2015
Direct measurement of T cell receptor affinity and sequence from naïve antiviral T cells
SQ Zhang, P Parker, KY Ma, C He, Q Shi, Z Cui, CM Williams, BS Wendel, ...
Science translational medicine 8 (341), 341ra77-341ra77, 2016
High-throughput and high-dimensional single-cell analysis of antigen-specific CD8+ T cells
KY Ma, AA Schonnesen, C He, AY Xia, E Sun, E Chen, KR Sebastian, ...
Nature immunology 22 (12), 1590-1598, 2021
Immune repertoire sequencing using molecular identifiers enables accurate clonality discovery and clone size quantification
KY Ma, C He, BS Wendel, CM Williams, J Xiao, H Yang, N Jiang
Frontiers in immunology 9, 33, 2018
Accurate immune repertoire sequencing reveals malaria infection driven antibody lineage diversification in young children
BS Wendel, C He, M Qu, D Wu, SM Hernandez, KY Ma, EW Liu, J Xiao, ...
Nature communications 8 (1), 531, 2017
GMOL: an interactive tool for 3D genome structure visualization
J Nowotny, A Wells, O Oluwadare, L Xu, R Cao, T Trieu, C He, J Cheng
Scientific reports 6 (1), 1-8, 2016
The receptor repertoire and functional profile of follicular T cells in HIV-infected lymph nodes
BS Wendel, D Del Alcazar, C He, PM Del Río-Estrada, B Aiamkitsumrit, ...
Science immunology 3 (22), eaan8884, 2018
MiRmat: mature microRNA sequence prediction
C He, YX Li, G Zhang, Z Gu, R Yang, J Li, ZJ Lu, ZH Zhou, C Zhang, ...
PLoS One 7 (12), e51673, 2012
The regulation of inherently autoreactive VH4-34–expressing B cells in individuals living in a malaria-endemic area of West Africa
GT Hart, M Akkaya, AS Chida, C Wei, SA Jenks, C Tipton, C He, ...
The Journal of Immunology 197 (10), 3841-3849, 2016
Mapping the Lineage Relationship between CXCR5+ and CXCR5− CD4+ T Cells in HIV-Infected Human Lymph Nodes
D Del Alcazar, Y Wang, C He, BS Wendel, PM Del Río-Estrada, J Lin, ...
Cell reports 28 (12), 3047-3060. e7, 2019
Bringing machine learning to research on intellectual and developmental disabilities: Taking inspiration from neurological diseases
C Gupta, P Chandrashekar, T Jin, C He, S Khullar, Q Chang, D Wang
Journal of Neurodevelopmental Disorders 14 (1), 28, 2022
Normalized Synergy Predicts That CD8 Co-Receptor Contribution to T Cell Receptor (TCR) and pMHC Binding Decreases As TCR Affinity Increases in Human Viral-Specific T Cells
CM Williams, AA Schonnesen, SQ Zhang, KY Ma, C He, T Yamamoto, ...
Frontiers in immunology 8, 894, 2017
BOMA, a machine-learning framework for comparative gene expression analysis across brains and organoids
C He, NC Kalafut, SO Sandoval, R Risgaard, CL Sirois, C Yang, S Khullar, ...
Cell Reports Methods, 2023
A streamlined approach to antibody novel germline allele prediction and validation
BS Wendel, C He, PD Crompton, SK Pierce, N Jiang
Frontiers in immunology 8, 1072, 2017
Rapid HIV progression is associated with extensive ongoing somatic hypermutation
BS Wendel, Y Fu, C He, SM Hernandez, M Qu, Z Zhang, Y Jiang, X Han, ...
The Journal of Immunology 205 (3), 587-594, 2020
Lineage tracking the generation of T regulatory cells from microbial activated T effector cells in naive mice
K Zhu, C He, SQ Liu, M Qu, T Xie, X Yang, L Lei, X Zhou, L Shi, D Zhang, ...
Frontiers in Immunology 10, 3109, 2020
DeepGAMI: deep biologically guided auxiliary learning for multimodal integration and imputation to improve genotype–phenotype prediction
PB Chandrashekar, S Alatkar, J Wang, GE Hoffman, C He, T Jin, S Khullar, ...
Genome Medicine 15 (1), 88, 2023
Transcriptome and TCR Repertoire Measurements of CXCR3+ T Follicular Helper Cells Within HIV-Infected Human Lymph Nodes
C He, MJ Malone, BS Wendel, KY Ma, D Del Alcazar, DB Weiner, ...
Frontiers in immunology 13, 2022
High-Throughput and High-Dimensional Single Cell Analysis of Antigen-Specific CD8+ T cells
N Jiang, K Ma, AA Schonnesen, C He, A Xia, E Sun, E Chen, K Sebastian, ...
The Journal of Immunology 206 (1_Supplement), 27.22-27.22, 2021
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