Simon Roux
Simon Roux
DOE Joint Genome Institute
Verified email at lbl.gov - Homepage
Title
Cited by
Cited by
Year
Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
DW Kang, JB Adams, AC Gregory, T Borody, L Chittick, A Fasano, ...
Microbiome 5 (1), 10, 2017
5022017
Determinants of community structure in the global plankton interactome
G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ...
Science 348 (6237), 2015
4572015
VirSorter: mining viral signal from microbial genomic data
S Roux, F Enault, BL Hurwitz, MB Sullivan
PeerJ 3, e985, 2015
4292015
Patterns and ecological drivers of ocean viral communities
JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ...
Science 348 (6237), 2015
4162015
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
S Roux, JR Brum, BE Dutilh, S Sunagawa, MB Duhaime, A Loy, ...
Nature, 2016
3412016
Plankton networks driving carbon export in the oligotrophic ocean
L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ...
Nature 532 (7600), 465-470, 2016
3372016
Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
S Roux, SJ Hallam, T Woyke, MB Sullivan
elife 4, e08490, 2015
2362015
Metavir 2: new tools for viral metagenome comparison and assembled virome analysis
S Roux, J Tournayre, A Mahul, D Debroas, F Enault
BMC bioinformatics 15 (1), 1-12, 2014
1902014
Assessing the diversity and specificity of two freshwater viral communities through metagenomics
S Roux, F Enault, A Robin, V Ravet, S Personnic, S Theil, J Colombet, ...
PLoS One 7 (3), e33641, 2012
1812012
Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses
F Enault, A Briet, L Bouteille, S Roux, MB Sullivan, MA Petit
The ISME journal 11 (1), 237-247, 2017
1632017
Metavir: a web server dedicated to virome analysis
S Roux, M Faubladier, A Mahul, N Paulhe, A Bernard, D Debroas, ...
Bioinformatics 27 (21), 3074-3075, 2011
1502011
Marine DNA viral macro-and microdiversity from pole to pole
AC Gregory, AA Zayed, N Conceição-Neto, B Temperton, B Bolduc, ...
Cell 177 (5), 1109-1123. e14, 2019
1362019
Evolution and Diversity of the Microviridae Viral Family through a Collection of 81 New Complete Genomes Assembled from Virome Reads
S Roux, M Krupovic, A Poulet, D Debroas, F Enault
PloS one 7 (7), e40418, 2012
1332012
Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
S Roux, AK Hawley, MT Beltran, M Scofield, P Schwientek, ...
eLife 3, e03125, 2014
1272014
Environmental characteristics of Agulhas rings affect interocean plankton transport
E Villar, GK Farrant, M Follows, L Garczarek, S Speich, S Audic, L Bittner, ...
Science 348 (6237), 2015
1112015
Host-linked soil viral ecology along a permafrost thaw gradient
JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ...
Nature microbiology 3 (8), 870-880, 2018
992018
Minimum information about an uncultivated virus genome (MIUViG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29-37, 2019
942019
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
HB Jang, B Bolduc, O Zablocki, JH Kuhn, S Roux, EM Adriaenssens, ...
Nature biotechnology 37 (6), 632-639, 2019
912019
Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
S Roux, JB Emerson, EA Eloe-Fadrosh, MB Sullivan
PeerJ 5, e3817, 2017
912017
Towards quantitative viromics for both double-stranded and single-stranded DNA viruses
S Roux, NE Solonenko, VT Dang, BT Poulos, SM Schwenck, ...
PeerJ 4, e2777, 2016
902016
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Articles 1–20