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Necmettin Yildirim
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Year
Feedback regulation in the lactose operon: a mathematical modeling study and comparison with experimental data
N Yildirim, MC Mackey
Biophysical journal 84 (5), 2841-2851, 2003
2812003
β2-adrenergic receptor signaling and desensitization elucidated by quantitative modeling of real time cAMP dynamics
JD Violin, LM DiPilato, N Yildirim, TC Elston, J Zhang, RJ Lefkowitz
Journal of biological chemistry 283 (5), 2949-2961, 2008
2772008
Dynamics and bistability in a reduced model of the lac operon
N Yildirim, M Santillan, D Horike, MC Mackey
Chaos: An Interdisciplinary Journal of Nonlinear Science 14 (2), 279-292, 2004
1162004
Regulators of G protein signaling and transient activation of signaling: experimental and computational analysis reveals negative and positive feedback controls on G protein …
N Hao, N Yildirim, Y Wang, TC Elston, HG Dohlman
Journal of Biological Chemistry 278 (47), 46506-46515, 2003
1082003
An improvement on Fibonacci search method in optimization theory
M Subasi, N Yildirim, B Yildiz
Applied mathematics and computation 147 (3), 893-901, 2004
552004
Modeling operon dynamics: the tryptophan and lactose operons as paradigms
MC Mackey, M Santillán, N Yildirim
Comptes rendus. Biologies 327 (3), 211-224, 2004
392004
Parameter estimation of nonlinear models in biochemistry: a comparative study on optimization methods
N Yildirim, F Akçay, H Okur, D Yildirim
Applied mathematics and computation 140 (1), 29-36, 2003
252003
Combined computational and experimental analysis reveals mitogen-activated protein kinase–mediated feedback phosphorylation as a mechanism for signaling specificity
N Hao, N Yildirim, MJ Nagiec, SC Parnell, B Errede, HG Dohlman, ...
Molecular biology of the cell 23 (19), 3899-3910, 2012
202012
Mathematical modeling of RGS and G-protein regulation in yeast
N Yildirim, N Hao, HG Dohlman, TC Elston
Methods in enzymology 389, 383-398, 2004
192004
Derivation of conservation relationships for metabolic networks using MAPLE
N Yildirim, M Bayram
Applied Mathematics and Computation 112 (2-3), 255-263, 2000
112000
An analysis of the kinetics of unstable enzymatic systems using MAPLE
N Yildirim, M Bayram
Applied mathematics and computation 112 (1), 41-48, 2000
102000
Mathematical modeling of the low and high affinity arabinose transport systems in Escherichia coli
N Yildirim
Molecular BioSystems 8 (4), 1319-1324, 2012
92012
Deterministic and stochastic simulation and analysis of biochemical reaction networks: The lactose operon example
N Yildirim, C Kazanci
Methods in enzymology 487, 371-395, 2011
92011
Kinetic analysis of multi enzyme systems: A case study of the closed system of creatine kinase, hexokinase and glucose 6-phosphate dehydrogenase
N Yildirim, M Çiftçi, Öİ Küfrevioğlu
Journal of mathematical chemistry 31, 121-130, 2002
72002
Metabolic control analysis of trio enzymes system
M Bayram, N Yildirim
Applied mathematics and computation 170 (2), 948-957, 2005
62005
Mathematical modeling reveals differential regulation of MAPK activity by phosphatase proteins in the yeast pheromone response pathway
N Dyjack, C Azeredo-Tseng, N Yildirim
Molecular BioSystems 13 (7), 1323-1335, 2017
42017
Mathematical modeling deciphers the benefits of alternatively-designed conserved activatory and inhibitory gene circuits
A Ay, N Wilner, N Yildirim
Molecular BioSystems 11 (7), 2017-2030, 2015
42015
Dynamics matter: differences and similarities between alternatively designed mechanisms
A Ay, N Yildirim
Molecular BioSystems 10 (7), 1948-1957, 2014
42014
Use of symbolic and numeric computation techniques in analysis of biochemical reaction networks
N Yildirim
International journal of quantum chemistry 106 (1), 256-265, 2006
42006
Application of Gröbner Bases theory to derive rate equations for enzyme catalysed reactions with two or more substrates or products
N Yildirim, N Ankaralioglu, D Yildrim, F Akcay
Applied mathematics and computation 137 (1), 67-76, 2003
42003
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