Yosuke Nishimura

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Coauteurs

Hiroyuki OgataInstitute for Chemical Research, Kyoto UniversityAdresse e-mail validée de kuicr.kyoto-u.ac.jp
Susumu GotoDatabase Center for Life Science, Research Organization of Information and SystemsAdresse e-mail validée de dbcls.rois.ac.jp
Takashi YoshidaKyoto UniversityAdresse e-mail validée de kais.kyoto-u.ac.jp
Pascal HingampAssociate Professor, Aix Marseille University, FranceAdresse e-mail validée de univ-amu.fr
Masaaki KoteraPreferred Networks Inc., | Tokyo Medical and Dental University | University of TokyoAdresse e-mail validée de preferred.jp
Romain Blanc-MathieuCEAAdresse e-mail validée de cea.fr
Susumu YoshizawaAssociate Professor, Atmosphere and Ocean Research Institute), The University of Tokyo, JapanAdresse e-mail validée de aori.u-tokyo.ac.jp
Daichi MorimotoResearch associate, Kyoto UniversityAdresse e-mail validée de kyoto-u.jp
Genki YoshikawaKyoto UniversityAdresse e-mail validée de kuicr.kyoto-u.ac.jp
Simon RouxDOE Joint Genome InstituteAdresse e-mail validée de lbl.gov
Matthew B SullivanProfessor, Ohio State University / Founding Director, Center of Microbiome ScienceAdresse e-mail validée de osu.edu
Yoshihiro YamanishiKyushu Institute of TechnologyAdresse e-mail validée de bio.kyutech.ac.jp
Yuki SudoFaculty of Med., Dent. & Pharm. Sci., Okayama Univ., JapanAdresse e-mail validée de okayama-u.ac.jp
Kento TominagaThe University of TokyoAdresse e-mail validée de edu.k.u-tokyo.ac.jp
Shin-ichi NakanoCenter for Ecological Research, Kyoto UniversityAdresse e-mail validée de ecology.kyoto-u.ac.jp
Minoru KanehisaProfessor, Institute for Chemical Research, Kyoto UniversityAdresse e-mail validée de kuicr.kyoto-u.ac.jp
Yusuke OkazakiKyoto UniversityAdresse e-mail validée de kuicr.kyoto-u.ac.jp
Shigeko KimuraUniversity of Shiga PrefectureAdresse e-mail validée de office.usp.ac.jp
Moriya YukiDatabase Center for Life ScienceAdresse e-mail validée de dbcls.rois.ac.jp
Toshiaki KatayamaDatabase Center for Life ScienceAdresse e-mail validée de dbcls.jp

Suivre

Yosuke Nishimura

CeBN, Japan Agency for Marine-Earth Science and Technology

Adresse e-mail validée de jamstec.go.jp

microbiology metagenome bioinformatics


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
ViPTree: the viral proteomic tree server Y Nishimura, T Yoshida, M Kuronishi, H Uehara, H Ogata, S Goto Bioinformatics 33 (15), 2379-2380, 2017	265	2017
Linking virus genomes with host taxonomy T Mihara, Y Nishimura, Y Shimizu, H Nishiyama, G Yoshikawa, H Uehara, ... Viruses 8 (3), 66, 2016	239	2016
Drug target prediction using adverse event report systems: a pharmacogenomic approach M Takarabe, M Kotera, Y Nishimura, S Goto, Y Yamanishi Bioinformatics 28 (18), i611-i618, 2012	144	2012
Environmental viral genomes shed new light on virus-host interactions in the ocean Y Nishimura, H Watai, T Honda, T Mihara, K Omae, S Roux, ... mSphere 2 (2), e00359-16, 2017	86*	2017
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ... Journal of biomedical semantics 5, 1-13, 2014	66	2014
Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan T Yoshida, Y Nishimura, H Watai, N Haruki, D Morimoto, H Kaneko, ... The ISME Journal 12 (5), 1287-1295, 2018	37	2018
Two asian jumbo phages, ϕRSL2 and ϕRSF1, infect Ralstonia solanacearum and show common features of ϕKZ-related phages A Bhunchoth, R Blanc-Mathieu, T Mihara, Y Nishimura, A Askora, ... Virology 494, 56-66, 2016	36	2016
Genome‐resolved viral and cellular metagenomes revealed potential key virus‐host interactions in a deep freshwater lake Y Okazaki, Y Nishimura, T Yoshida, H Ogata, S Nakano Environmental Microbiology 21 (12), 4740-4754, 2019	35	2019
Photochemical Characterization of a New Heliorhodopsin from the Gram-Negative Eubacterium Bellilinea caldifistulae (BcHeR) and Comparison with … A Shibukawa, K Kojima, Y Nakajima, Y Nishimura, S Yoshizawa, Y Sudo Biochemistry 58 (26), 2934-2943, 2019	20	2019
Cooccurrence of broad-and narrow-host-range viruses infecting the bloom-forming toxic cyanobacterium Microcystis aeruginosa D Morimoto, K Tominaga, Y Nishimura, N Yoshida, S Kimura, Y Sako, ... Applied and environmental microbiology 85 (18), e01170-19, 2019	16	2019
In silico Prediction of Virus-Host Interactions for Marine Bacteroidetes With the Use of Metagenome-Assembled Genomes K Tominaga, D Morimoto, Y Nishimura, H Ogata, T Yoshida Frontiers in Microbiology 11, 738, 2020	14	2020
PIERO ontology for analysis of biochemical transformations: effective implementation of reaction information in the IUBMB enzyme list M Kotera, Y Nishimura, ZI Nakagawa, A Muto, Y Moriya, S Okamoto, ... Journal of bioinformatics and computational biology 12 (06), 1442001, 2014	12	2014
A unique clade of light-driven proton-pumping rhodopsins evolved in the cyanobacterial lineage M Hasegawa, T Hosaka, K Kojima, Y Nishimura, Y Nakajima, ... Scientific reports 10 (1), 1-10, 2020	11	2020
The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments Y Nishimura, S Yoshizawa Scientific Data 9, 305, 2022	8	2022
Genome-wide analysis of plant UGT family based on sequence and substrate information Y Nishimura, T Tokimatsu, M Kotera, S Goto, M Kanehisa Genome Informatics 2010: Genome Informatics Series Vol. 24, 127-138, 2010	4*	2010
Proton-pumping rhodopsins in marine diatoms S Yoshizawa, T Azuma, K Kojima, K Inomura, M Hasegawa, Y Nishimura, ... bioRxiv, 2022.01. 18.476826, 2022	1	2022
Prevalence of viral frequency-dependent infection in coastal marine prokaryotes revealed using monthly time series virome analysis K Tominaga, N Ogawa-Haruki, Y Nishimura, H Watai, K Yamamoto, ... bioRxiv, 2021.09. 23.461490, 2021	1	2021
Distribution and survival strategies of diazotrophs in the Arctic Ocean revealed by global-scale metagenomic analysis T Shiozaki, Y Nishimura, S Yoshizawa, H Takami, K Hamasaki, ... bioRxiv, 2022.10. 28.514325, 2022		2022
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services T Katayama, S Kawashima, G Micklem, S Kawano, JD Kim, S Kocbek, ... F1000Research 8 (1677), 1677, 2019		2019

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