David Dulin
David Dulin
VU Amsterdam – Physics of Living Systems
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Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA
J Lipfert, GM Skinner, JM Keegstra, T Hensgens, T Jager, D Dulin, ...
Proceedings of the National Academy of Sciences 111 (43), 15408-15413, 2014
Studying genomic processes at the single-molecule level: introducing the tools and applications
D Dulin, J Lipfert, MC Moolman, NH Dekker
Nature Reviews Genetics 14 (1), 9-22, 2013
An optimized software framework for real-time, high-throughput tracking of spherical beads
JP Cnossen, D Dulin, NH Dekker
Review of Scientific Instruments 85 (10), 103712, 2014
High spatiotemporal-resolution magnetic tweezers: calibration and applications for DNA dynamics
D Dulin, TJ Cui, J Cnossen, MW Docter, J Lipfert, NH Dekker
Biophysical journal 109 (10), 2113-2125, 2015
Biological magnetometry: torque on superparamagnetic beads in magnetic fields
MM Van Oene, LE Dickinson, F Pedaci, M Köber, D Dulin, J Lipfert, ...
Physical review letters 114 (21), 218301, 2015
Elongation-competent pauses govern the fidelity of a viral RNA-dependent RNA polymerase
D Dulin, ID Vilfan, BA Berghuis, S Hage, DH Bamford, MM Poranen, ...
Cell reports 10 (6), 983-992, 2015
A force calibration standard for magnetic tweezers
Z Yu, D Dulin, J Cnossen, M Köber, MM van Oene, O Ordu, BA Berghuis, ...
Review of Scientific Instruments 85 (12), 123114, 2014
Signatures of nucleotide analog incorporation by an RNA-dependent RNA polymerase revealed using high-throughput magnetic tweezers
D Dulin, JJ Arnold, T van Laar, HS Oh, C Lee, AL Perkins, DA Harki, ...
Cell reports 21 (4), 1063-1076, 2017
Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers
F Kriegel, N Ermann, R Forbes, D Dulin, NH Dekker, J Lipfert
Nucleic acids research 45 (10), 5920-5929, 2017
Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria
D Dulin, DLV Bauer, AM Malinen, JJW Bakermans, M Kaller, Z Morichaud, ...
Nature communications 9 (1), 1478, 2018
Invincible DNA tethers: Covalent DNA anchoring for enhanced temporal and force stability in magnetic tweezers experiments
R Janissen, BA Berghuis, D Dulin, M Wink, T van Laar, NH Dekker
Nucleic acids research 42 (18), e137-e137, 2014
Strand separation establishes a sustained lock at the Tus–Ter replication fork barrier
BA Berghuis, D Dulin, ZQ Xu, T Van Laar, B Cross, R Janissen, S Jergic, ...
Nature chemical biology 11 (8), 579-585, 2015
Inhibition of SARS-CoV-2 polymerase by nucleotide analogs from a single-molecule perspective
M Seifert, SC Bera, P van Nies, RN Kirchdoerfer, A Shannon, TTN Le, ...
eLife 10, e70968, 2021
Untangling reaction pathways through modern approaches to high-throughput single-molecule force-spectroscopy experiments
D Dulin, BA Berghuis, M Depken, NH Dekker
Current opinion in structural biology 34, 116-122, 2015
Efficient illumination for microsecond tracking microscopy
D Dulin, S Barland, X Hachair, F Pedaci
PloS one 9 (9), e107335, 2014
Simultaneous calibration of optical tweezers spring constant and position detector response
A Le Gall, K Perronet, D Dulin, A Villing, P Bouyer, K Visscher, ...
Optics Express 18 (25), 26469-26474, 2010
Backtracking behavior in viral RNA-dependent RNA polymerase provides the basis for a second initiation site
D Dulin, ID Vilfan, BA Berghuis, MM Poranen, M Depken, NH Dekker
Nucleic acids research 43 (21), 10421-10429, 2015
Correction-free force calibration for magnetic tweezers experiments
E Ostrofet, FS Papini, D Dulin
Scientific reports 8 (1), 1-10, 2018
Hysteresis in DNA compaction by Dps is described by an Ising model
NN Vtyurina, D Dulin, MW Docter, AS Meyer, NH Dekker, ...
Proceedings of the National Academy of Sciences 113 (18), 4982-4987, 2016
Improved photon yield from a green dye with a reducing and oxidizing system
A Le Gall, D Dulin, G Clavier, R Méallet‐Renault, P Bouyer, K Perronet, ...
ChemPhysChem 12 (9), 1657-1660, 2011
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