David Dulin

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Nynke H. DekkerFull ProfessorAdresse e-mail validée de tudelft.nl
Jan LipfertDepartment of Physics, Utrecht University, The NetherlandsAdresse e-mail validée de lmu.de
Antoine Le GallChargé de recherche, CNRS, Centre de Biochimie Structurale, MontpellierAdresse e-mail validée de cbs.cnrs.fr
Bojk A. BerghuisPostdoctoral Scholar, Stanford UniversityAdresse e-mail validée de stanford.edu
Martin DepkenBionanoscience Dep., TU DelftAdresse e-mail validée de tudelft.nl
Jelmer CnossenVrije Universiteit AmsterdamAdresse e-mail validée de vu.nl
BOUYER PhilippeQuantum Delta NL, Univ. van Amsterdam, Technical University Eindhoven, Institut d'OptiqueAdresse e-mail validée de institutoptique.fr
Richard JanissenKavli Institute of Nanoscience DelftAdresse e-mail validée de bionanotech.eu
olivier NamyCNRSAdresse e-mail validée de igmors.u-psud.fr
Francesco PedaciCBS CNRS, Montpellier - FranceAdresse e-mail validée de cbs.cnrs.fr
Achillefs KapanidisProfessor in Biological Physics, University of OxfordAdresse e-mail validée de physics.ox.ac.uk
Jacob J. W. BakermansUniversity of OxfordAdresse e-mail validée de dtc.ox.ac.uk
Daniel A. HarkiNorthrop Professor, Department of Medicinal Chemistry, University of MinnesotaAdresse e-mail validée de umn.edu
Nicholas DixonProfessor of Chemistry, University of WollongongAdresse e-mail validée de uow.edu.au
Rhiju DasAssociate Professor of Biochemistry & Physics, Stanford UniversityAdresse e-mail validée de stanford.edu
Fang-Chieh ChouSoftware Engineer, DoorDash LabsAdresse e-mail validée de alumni.stanford.edu
Anne S. MeyerUniversity of RochesterAdresse e-mail validée de rochester.edu
Natalia VtyurinaGroningen Research Institute of PharmacyAdresse e-mail validée de rug.nl
Elio AbbondanzieriResearch Assistant Professor, University of RochesterAdresse e-mail validée de rochester.edu
stephane barlandInstitut Non Lineaire de Nice - Université de NiceAdresse e-mail validée de inln.cnrs.fr

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David Dulin

VU Amsterdam – Physics of Living Systems

Adresse e-mail validée de vu.nl - Page d'accueil

single-molecule biophysics magnetic tweezers FRET transcription RNA virus


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Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA J Lipfert, GM Skinner, JM Keegstra, T Hensgens, T Jager, D Dulin, ... Proceedings of the National Academy of Sciences 111 (43), 15408-15413, 2014	169	2014
Studying genomic processes at the single-molecule level: introducing the tools and applications D Dulin, J Lipfert, MC Moolman, NH Dekker Nature Reviews Genetics 14 (1), 9-22, 2013	103	2013
An optimized software framework for real-time, high-throughput tracking of spherical beads JP Cnossen, D Dulin, NH Dekker Review of Scientific Instruments 85 (10), 103712, 2014	100	2014
High spatiotemporal-resolution magnetic tweezers: calibration and applications for DNA dynamics D Dulin, TJ Cui, J Cnossen, MW Docter, J Lipfert, NH Dekker Biophysical journal 109 (10), 2113-2125, 2015	90	2015
Biological magnetometry: torque on superparamagnetic beads in magnetic fields MM Van Oene, LE Dickinson, F Pedaci, M Köber, D Dulin, J Lipfert, ... Physical review letters 114 (21), 218301, 2015	79	2015
Elongation-competent pauses govern the fidelity of a viral RNA-dependent RNA polymerase D Dulin, ID Vilfan, BA Berghuis, S Hage, DH Bamford, MM Poranen, ... Cell reports 10 (6), 983-992, 2015	72	2015
A force calibration standard for magnetic tweezers Z Yu, D Dulin, J Cnossen, M Köber, MM van Oene, O Ordu, BA Berghuis, ... Review of Scientific Instruments 85 (12), 123114, 2014	66	2014
Signatures of nucleotide analog incorporation by an RNA-dependent RNA polymerase revealed using high-throughput magnetic tweezers D Dulin, JJ Arnold, T van Laar, HS Oh, C Lee, AL Perkins, DA Harki, ... Cell reports 21 (4), 1063-1076, 2017	60	2017
Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers F Kriegel, N Ermann, R Forbes, D Dulin, NH Dekker, J Lipfert Nucleic acids research 45 (10), 5920-5929, 2017	57	2017
Pausing controls branching between productive and non-productive pathways during initial transcription in bacteria D Dulin, DLV Bauer, AM Malinen, JJW Bakermans, M Kaller, Z Morichaud, ... Nature communications 9 (1), 1478, 2018	53	2018
Invincible DNA tethers: Covalent DNA anchoring for enhanced temporal and force stability in magnetic tweezers experiments R Janissen, BA Berghuis, D Dulin, M Wink, T van Laar, NH Dekker Nucleic acids research 42 (18), e137-e137, 2014	50	2014
Strand separation establishes a sustained lock at the Tus–Ter replication fork barrier BA Berghuis, D Dulin, ZQ Xu, T Van Laar, B Cross, R Janissen, S Jergic, ... Nature chemical biology 11 (8), 579-585, 2015	47	2015
Inhibition of SARS-CoV-2 polymerase by nucleotide analogs from a single-molecule perspective M Seifert, SC Bera, P van Nies, RN Kirchdoerfer, A Shannon, TTN Le, ... eLife 10, e70968, 2021	43	2021
Untangling reaction pathways through modern approaches to high-throughput single-molecule force-spectroscopy experiments D Dulin, BA Berghuis, M Depken, NH Dekker Current opinion in structural biology 34, 116-122, 2015	42	2015
Efficient illumination for microsecond tracking microscopy D Dulin, S Barland, X Hachair, F Pedaci PloS one 9 (9), e107335, 2014	35	2014
Simultaneous calibration of optical tweezers spring constant and position detector response A Le Gall, K Perronet, D Dulin, A Villing, P Bouyer, K Visscher, ... Optics Express 18 (25), 26469-26474, 2010	35	2010
Backtracking behavior in viral RNA-dependent RNA polymerase provides the basis for a second initiation site D Dulin, ID Vilfan, BA Berghuis, MM Poranen, M Depken, NH Dekker Nucleic acids research 43 (21), 10421-10429, 2015	34	2015
Correction-free force calibration for magnetic tweezers experiments E Ostrofet, FS Papini, D Dulin Scientific reports 8 (1), 1-10, 2018	33	2018
Hysteresis in DNA compaction by Dps is described by an Ising model NN Vtyurina, D Dulin, MW Docter, AS Meyer, NH Dekker, ... Proceedings of the National Academy of Sciences 113 (18), 4982-4987, 2016	33	2016
Improved photon yield from a green dye with a reducing and oxidizing system A Le Gall, D Dulin, G Clavier, R Méallet‐Renault, P Bouyer, K Perronet, ... ChemPhysChem 12 (9), 1657-1660, 2011	24	2011

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