| Rearrangements of 2.5 Kilobases of Noncoding DNA from the Drosophila even-skipped Locus Define Predictive Rules of Genomic cis-Regulatory Logic AR Kim, C Martinez, J Ionides, AF Ramos, MZ Ludwig, N Ogawa, ... PLoS genetics 9 (2), e1003243, 2013 | 78 | 2013 |
| Exact time-dependent solutions for a self-regulating gene AF Ramos, GCP Innocentini, JEM Hornos Physical Review E 83 (6), 062902, 2011 | 52 | 2011 |
| Symmetry in biology: from genetic code to stochastic gene regulation AF Ramos, GCP Innocentini, FM Forger, JEM Hornos IET systems biology 4 (5), 311-329, 2010 | 43 | 2010 |
| Symmetry and stochastic gene regulation AF Ramos, JEM Hornos Physical review letters 99 (10), 108103, 2007 | 30 | 2007 |
| Myokines in treatment-naïve patients with cancer-associated cachexia GS de Castro, J Correia-Lima, E Simoes, CE Orsso, J Xiao, LR Gama, ... Clinical nutrition 40 (4), 2443-2455, 2021 | 25 | 2021 |
| Multimodality and flexibility of stochastic gene expression GCP Innocentini, M Forger, AF Ramos, O Radulescu, JEM Hornos Bulletin of mathematical biology 75, 2600-2630, 2013 | 24 | 2013 |
| Limited inhibition of multiple nodes in a driver network blocks metastasis AE Yesilkanal, D Yang, A Valdespino, P Tiwari, AU Sabino, LC Nguyen, ... Elife 10, e59696, 2021 | 22 | 2021 |
| Optimal circulant graphs as low-latency network topologies X Huang, A F. Ramos, Y Deng The Journal of Supercomputing 78 (11), 13491-13510, 2022 | 21 | 2022 |
| Peri/epicellular protein disulfide isomerase-A1 acts as an upstream organizer of cytoskeletal mechanoadaptation in vascular smooth muscle cells LY Tanaka, TLS Araujo, AI Rodriguez, MS Ferraz, VB Pelegati, ... American Journal of Physiology-Heart and Circulatory Physiology 316 (3 …, 2019 | 21 | 2019 |
| Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation KA Barr, C Martinez, JR Moran, AR Kim, AF Ramos, J Reinitz BMC Systems Biology 11, 1-15, 2017 | 21 | 2017 |
| Stochastic model of contact inhibition and the proliferation of melanoma in situ MCC Morais, I Stuhl, AU Sabino, WW Lautenschlager, AS Queiroga, ... Scientific reports 7 (1), 8026, 2017 | 21 | 2017 |
| New strategies for targeting kinase networks in cancer AE Yesilkanal, GL Johnson, AF Ramos, MR Rosner Journal of Biological Chemistry 297 (4), 2021 | 20 | 2021 |
| Gene regulation and noise reduction by coupling of stochastic processes AF Ramos, JEM Hornos, J Reinitz Physical Review E 91, 020701(R), 2015 | 20 | 2015 |
| Optimal low-latency network topologies for cluster performance enhancement Y Deng, M Guo, AF Ramos, X Huang, Z Xu, W Liu The Journal of Supercomputing 76 (12), 9558-9584, 2020 | 18 | 2020 |
| Stochastic model for gene transcription on Drosophila melanogaster embryos AFR Guilherme N. Prata, José Eduardo M. Hornos Physical Review E 93, 022403, 2016 | 14 | 2016 |
| GD3 ganglioside-enriched extracellular vesicles stimulate melanocyte migration AH Otake, R de Freitas Saito, APM Duarte, AF Ramos, R Chammas Biochimica et Biophysica Acta (BBA)-Molecular and Cell Biology of Lipids …, 2019 | 13 | 2019 |
| A comparative analysis of noise properties of stochastic binary models for a self-repressing and for an externally regulating gene G Giovanini, AU Sabino, LRC Barros, AF Ramos Mathematical Biosciences and Engineering, 2020 | 10 | 2020 |
| Backward-stochastic-differential-equation approach to modeling of gene expression E Shamarova, R Chertovskih, AF Ramos, P Aguiar Physical Review E 95 (3), 032418, 2017 | 9 | 2017 |
| A stochastic binary model for the regulation of gene expression to investigate responses to gene therapy G Giovanini, LRC Barros, LR Gama, TC Tortelli Jr, AF Ramos Cancers 14 (3), 633, 2022 | 8 | 2022 |
| Symmetry insights for design of supercomputer network topologies: roots and weights lattices Y Deng, AF Ramos, JEM Hornos International Journal of Modern Physics B 26 (31), 1250169, 2012 | 8 | 2012 |
