Quaid Morris
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The genetic landscape of a cell
M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ...
science 327 (5964), 425-431, 2010
21242010
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
D Warde-Farley, SL Donaldson, O Comes, K Zuberi, R Badrawi, P Chao, ...
Nucleic acids research 38 (suppl_2), W214-W220, 2010
21132010
A compendium of RNA-binding motifs for decoding gene regulation
D Ray, H Kazan, KB Cook, MT Weirauch, HS Najafabadi, X Li, ...
Nature 499 (7457), 172-177, 2013
10102013
Diversity and complexity in DNA recognition by transcription factors
G Badis, MF Berger, AA Philippakis, S Talukder, AR Gehrke, SA Jaeger, ...
Science 324 (5935), 1720-1723, 2009
9282009
The human splicing code reveals new insights into the genetic determinants of disease
HY Xiong, B Alipanahi, LJ Lee, H Bretschneider, D Merico, RKC Yuen, ...
Science 347 (6218), 2015
8962015
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
S Mostafavi, D Ray, D Warde-Farley, C Grouios, Q Morris
Genome biology 9 (S1), S4, 2008
7642008
Dynamic modularity in protein interaction networks predicts breast cancer outcome
IW Taylor, R Linding, D Warde-Farley, Y Liu, C Pesquita, D Faria, S Bull, ...
Nature biotechnology 27 (2), 199-204, 2009
7462009
Cytoscape Web: an interactive web-based network browser
CT Lopes, M Franz, F Kazi, SL Donaldson, Q Morris, GD Bader
Bioinformatics 26 (18), 2347-2348, 2010
6382010
Exploration of essential gene functions via titratable promoter alleles
S Mnaimneh, AP Davierwala, J Haynes, J Moffat, WT Peng, W Zhang, ...
Cell 118 (1), 31-44, 2004
6242004
Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences
MF Berger, G Badis, AR Gehrke, S Talukder, AA Philippakis, ...
Cell 133 (7), 1266-1276, 2008
5862008
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling
T Kislinger, B Cox, A Kannan, C Chung, P Hu, A Ignatchenko, MS Scott, ...
Cell 125 (1), 173-186, 2006
5062006
Probing microRNAs with microarrays: tissue specificity and functional inference
T Babak, WEN Zhang, Q Morris, BJ Blencowe, TR Hughes
Rna 10 (11), 1813-1819, 2004
4622004
GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop
J Montojo, K Zuberi, H Rodriguez, F Kazi, G Wright, SL Donaldson, ...
Bioinformatics 26 (22), 2927-2928, 2010
4582010
Using expression profiling data to identify human microRNA targets
JC Huang, T Babak, TW Corson, G Chua, S Khan, BL Gallie, TR Hughes, ...
Nature methods 4 (12), 1045-1049, 2007
4292007
RBPDB: a database of RNA-binding specificities
KB Cook, H Kazan, K Zuberi, Q Morris, TR Hughes
Nucleic acids research 39 (suppl_1), D301-D308, 2010
3942010
Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins
D Ray, H Kazan, ET Chan, LP Castillo, S Chaudhry, S Talukder, ...
Nature biotechnology 27 (7), 667-670, 2009
3892009
The functional landscape of mouse gene expression
W Zhang, QD Morris, R Chang, O Shai, MA Bakowski, N Mitsakakis, ...
Journal of biology 3 (5), 1-22, 2004
3552004
Conservation of core gene expression in vertebrate tissues
ET Chan, GT Quon, G Chua, T Babak, M Trochesset, RA Zirngibl, J Aubin, ...
Journal of biology 8 (3), 1-17, 2009
3512009
Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform
Q Pan, O Shai, C Misquitta, W Zhang, AL Saltzman, N Mohammad, ...
Molecular cell 16 (6), 929-941, 2004
3472004
GeneMANIA prediction server 2013 update
K Zuberi, M Franz, H Rodriguez, J Montojo, CT Lopes, GD Bader, ...
Nucleic acids research 41 (W1), W115-W122, 2013
3132013
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