Brian Ondov
Brian Ondov
National Human Genome Research Institute
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Interactive metagenomic visualization in a Web browser
BD Ondov, NH Bergman, AM Phillippy
BMC bioinformatics 12 (1), 1-10, 2011
Mash: fast genome and metagenome distance estimation using MinHash
BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ...
Genome Biology, 2016
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes
TJ Treangen, BD Ondov, S Koren, AM Phillippy
Genome biology 15 (11), 1-15, 2014
Structure and complexity of a bacterial transcriptome
KD Passalacqua, A Varadarajan, BD Ondov, DT Okou, ME Zwick, ...
Journal of bacteriology 191 (10), 3203-3211, 2009
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline
TJ Treangen, S Koren, DD Sommer, B Liu, I Astrovskaya, B Ondov, ...
Genome biology 14 (1), 1-20, 2013
Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications
BD Ondov, A Varadarajan, KD Passalacqua, NH Bergman
Bioinformatics 24 (23), 2776-2777, 2008
Mash Screen: high-throughput sequence containment estimation for genome discovery
BD Ondov, GJ Starrett, A Sappington, A Kostic, S Koren, CB Buck, ...
Genome biology 20 (1), 1-13, 2019
Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923
TJ Treangen, RA Maybank, S Enke, MB Friss, LF Diviak, DKR Karaolis, ...
Genome announcements 2 (6), e01110-14, 2014
Strand-specific RNA-seq reveals ordered patterns of sense and antisense transcription in Bacillus anthracis
KD Passalacqua, A Varadarajan, C Weist, BD Ondov, B Byrd, TD Read, ...
PLoS One 7 (8), e43350, 2012
Face to face: Evaluating visual comparison
B Ondov, N Jardine, N Elmqvist, S Franconeri
IEEE Transactions on Visualization and Computer Graphics 25 (1), 861-871, 2018
An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System
BD Ondov, C Cochran, M Landers, GD Meredith, M Dudas, NH Bergman
Bioinformatics 26 (15), 1901-1902, 2010
Psoralen inactivation of viruses: a process for the safe manipulation of viral antigen and nucleic acid
K Schneider, L Wronka-Edwards, M Leggett-Embrey, E Walker, P Sun, ...
Viruses 7 (11), 5875-5888, 2015
The perceptual proxies of visual comparison
N Jardine, BD Ondov, N Elmqvist, S Franconeri
IEEE transactions on visualization and computer graphics 26 (1), 1012-1021, 2019
BLAST-based validation of metagenomic sequence assignments
AL Bazinet, BD Ondov, DD Sommer, S Ratnayake
PeerJ 6, e4892, 2018
Genome sequence of the attenuated Carbosap vaccine strain of Bacillus anthracis
R Harrington, BD Ondov, D Radune, MB Friss, J Klubnik, L Diviak, ...
Genome announcements 1 (1), e00067-12, 2013
Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up …
JS Meisel, DJ Nasko, B Brubach, V Cepeda-Espinoza, J Chopyk, ...
Microbiome 6 (1), 1-10, 2018
Revealing Perceptual Proxies with Adversarial Examples
BD Ondov, F Yang, M Kay, N Elmqvist, S Franconeri
IEEE Transactions on Visualization and Computer Graphics, 2020
Juxtaposition of hierarchical quantities with bipartite Krona charts
B Ondov, A Phillippy
F1000Research 6, 2017
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