Ozgur Akman
Ozgur Akman
Senior Lecturer in Applied Mathematics and Computational Systems Biology
Verified email at exeter.ac.uk - Homepage
Title
Cited by
Cited by
Year
Peeking into pit fields: a multiple twinning model of secondary plasmodesmata formation in tobacco
C Faulkner, OE Akman, K Bell, C Jeffree, K Oparka
The Plant Cell 20 (6), 1504-1518, 2008
1172008
Quantitative analysis of regulatory flexibility under changing environmental conditions
KD Edwards, OE Akman, K Knox, PJ Lumsden, AW Thomson, PE Brown, ...
Molecular systems biology 6 (1), 424, 2010
1022010
Digital clocks: simple Boolean models can quantitatively describe circadian systems
OE Akman, S Watterson, A Parton, N Binns, AJ Millar, P Ghazal
Journal of The Royal Society Interface 9 (74), 2365-2382, 2012
682012
Robustness from flexibility in the fungal circadian clock
OE Akman, DA Rand, PE Brown, AJ Millar
BMC systems biology 4 (1), 1-16, 2010
542010
Nested sampling for parameter inference in systems biology: application to an exemplar circadian model
S Aitken, OE Akman
BMC systems biology 7 (1), 1-12, 2013
432013
Isoform switching facilitates period control in the Neurospora crassa circadian clock
OE Akman, JCW Locke, S Tang, I Carré, AJ Millar, DA Rand
Molecular Systems Biology 4 (1), 164, 2008
382008
Eye movement instabilities and nystagmus can be predicted by a nonlinear dynamics model of the saccadic system
OE Akman, DS Broomhead, RV Abadi, RA Clement
Journal of mathematical biology 51 (6), 661-694, 2005
382005
Complementary approaches to understanding the plant circadian clock
OE Akman, ML Guerriero, L Loewe, C Troein
arXiv preprint arXiv:1002.4661, 2010
302010
Modelling Biological Clocks with Bio-PEPA: Stochasticity and Robustness for the Neurospora crassa Circadian Network
OE Akman, F Ciocchetta, A Degasperi, ML Guerriero
International Conference on Computational Methods in Systems Biology, 52-67, 2009
282009
Nonlinear time series analysis of jerk congenital nystagmus
OE Akman, DS Broomhead, RA Clement, RV Abadi
Journal of Computational Neuroscience 21 (2), 153-170, 2006
272006
Characterisation of congenital nystagmus waveforms in terms of periodic orbits
RA Clement, JP Whittle, MR Muldoon, RV Abadi, DS Broomhead, ...
Vision research 42 (17), 2123-2130, 2002
262002
Nonlinear dynamics in gene regulation promote robustness and evolvability of gene expression levels
A Steinacher, DG Bates, OE Akman, OS Soyer
PloS one 11 (4), e0153295, 2016
232016
Light and circadian regulation of clock components aids flexible responses to environmental signals
LE Dixon, SK Hodge, G van Ooijen, C Troein, OE Akman, AJ Millar
New Phytologist 203 (2), 568-577, 2014
212014
Mapping epigenetic changes to the host cell genome induced by Burkholderia pseudomallei reveals pathogen-specific and pathogen-generic signatures of infection
D Cizmeci, EL Dempster, OL Champion, S Wagley, OE Akman, JL Prior, ...
Scientific reports 6 (1), 1-9, 2016
192016
SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology
R Adams, A Clark, A Yamaguchi, N Hanlon, N Tsorman, S Ali, ...
Bioinformatics 29 (5), 664-665, 2013
162013
Ultrasensitive negative feedback control: a natural approach for the design of synthetic controllers
F Montefusco, OE Akman, OS Soyer, DG Bates
PloS one 11 (8), e0161605, 2016
152016
Stochastic models of cellular circadian rhythms in plants help to understand the impact of noise on robustness and clock structure
ML Guerriero, OE Akman, G van Ooijen
Frontiers in plant science 5, 564, 2014
142014
Components of the neural signal underlying congenital nystagmus
OE Akman, DS Broomhead, RV Abadi, RA Clement
Experimental brain research 220 (3-4), 213-221, 2012
112012
Reducing the complexity of mathematical models for the plant circadian clock by distributed delays
IT Tokuda, OE Akman, JCW Locke
Journal of theoretical biology 463, 155-166, 2019
102019
Optimisation of an exemplar oculomotor model using multi-objective genetic algorithms executed on a GPU-CPU combination
E Avramidis, OE Akman
BMC systems biology 11 (1), 1-23, 2017
92017
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Articles 1–20