| The genome of a songbird WC Warren, DF Clayton, H Ellegren, AP Arnold, LDW Hillier, A Künstner, ... Nature 464 (7289), 757-762, 2010 | 973 | 2010 |
| Genomic signatures of evolutionary transitions from solitary to group living KM Kapheim, H Pan, C Li, SL Salzberg, D Puiu, T Magoc, HM Robertson, ... Science 348 (6239), 1139-1143, 2015 | 401 | 2015 |
| Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression X He, MAH Samee, C Blatti, S Sinha PLoS computational biology 6 (9), e1000935, 2010 | 211 | 2010 |
| Lung epithelial and endothelial damage, loss of tissue repair, inhibition of fibrinolysis, and cellular senescence in fatal COVID-19 F D’Agnillo, KA Walters, Y Xiao, ZM Sheng, K Scherler, J Park, S Gygli, ... Science translational medicine 13 (620), eabj7790, 2021 | 195 | 2021 |
| Core and region-enriched networks of behaviorally regulated genes and the singing genome O Whitney, AR Pfenning, JT Howard, CA Blatti, F Liu, JM Ward, R Wang, ... Science 346 (6215), 1256780, 2014 | 127 | 2014 |
| The Transcription Factor Ultraspiracle Influences Honey Bee Social Behavior and Behavior-Related Gene Expression SA Ament, Y Wang, CC Chen, CA Blatti, F Hong, ZS Liang, N Negre, ... PLoS Genetics 8 (3), e1002596, 2012 | 92 | 2012 |
| Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants MS Enuameh, Y Asriyan, A Richards, RG Christensen, VL Hall, ... Genome research 23 (6), 928-940, 2013 | 88 | 2013 |
| Quantitative Analysis of the Drosophila Segmentation Regulatory Network Using Pattern Generating Potentials M Kazemian, C Blatti, A Richards, M McCutchan, N Wakabayashi-Ito, ... PLoS biology 8 (8), e1000456, 2010 | 84 | 2010 |
| Transcriptional regulation of brain gene expression in response to a territorial intrusion YO Sanogo, M Band, C Blatti, S Sinha, AM Bell Proceedings of the Royal Society B: Biological Sciences 279 (1749), 4929-4938, 2012 | 69 | 2012 |
| New meta-analysis tools reveal common transcriptional regulatory basis for multiple determinants of behavior SA Ament, CA Blatti, C Alaux, MM Wheeler, AL Toth, Y Le Conte, GJ Hunt, ... Proceedings of the National Academy of Sciences 109 (26), E1801-E1810, 2012 | 63 | 2012 |
| Computational identification of diverse mechanisms underlying transcription factor-DNA occupancy Q Cheng, M Kazemian, H Pham, C Blatti, SE Celniker, SA Wolfe, ... PLoS genetics 9 (8), e1003571, 2013 | 59 | 2013 |
| Characterizing gene sets using discriminative random walks with restart on heterogeneous biological networks C Blatti, S Sinha Bioinformatics 32 (14), 2167-2175, 2016 | 50 | 2016 |
| Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism C Blatti, M Kazemian, S Wolfe, M Brodsky, S Sinha Nucleic acids research 43 (8), 3998-4012, 2015 | 44 | 2015 |
| Knowledge-guided analysis of" omics" data using the KnowEnG cloud platform C Blatti III, A Emad, MJ Berry, L Gatzke, M Epstein, D Lanier, P Rizal, J Ge, ... PLoS biology 18 (1), e3000583, 2020 | 38 | 2020 |
| Cross‐species systems analysis of evolutionary toolkits of neurogenomic response to social challenge MC Saul, C Blatti, W Yang, SA Bukhari, HY Shpigler, JM Troy, CH Seward, ... Genes, Brain and Behavior 18 (1), e12502, 2019 | 36 | 2019 |
| Individual differences in honey bee behavior enabled by plasticity in brain gene regulatory networks BM Jones, VD Rao, T Gernat, T Jagla, AC Cash-Ahmed, BER Rubin, ... Elife 9, e62850, 2020 | 35 | 2020 |
| Reptiles and mammals have differentially retained long conserved noncoding sequences from the amniote ancestor DE Janes, C Chapus, Y Gondo, DF Clayton, S Sinha, CA Blatti, CL Organ, ... Genome biology and evolution 3, 102-113, 2011 | 35 | 2011 |
| Draft Genome Assembly and Population Genetics of an Agricultural Pollinator, the Solitary Alkali Bee (Halictidae: Nomia melanderi) KM Kapheim, H Pan, C Li, C Blatti III, BA Harpur, P Ioannidis, BM Jones, ... G3: Genes, Genomes, Genetics 9 (3), 625-634, 2019 | 22 | 2019 |
| Motif enrichment tool C Blatti, S Sinha Nucleic acids research 42 (W1), W20-W25, 2014 | 13 | 2014 |
| Comparison of single and module-based methods for modeling gene regulatory networks M Hernaez, C Blatti, O Gevaert Bioinformatics 36 (2), 558-567, 2020 | 12 | 2020 |
