Alain Viari
Alain Viari
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The complete genome sequence of the gram-positive bacterium Bacillus subtilis
F Kunst, N Ogasawara, I Moszer, AM Albertini, GO Alloni, V Azevedo, ...
Nature 390 (6657), 249-256, 1997
Landscape of somatic mutations in 560 breast cancer whole-genome sequences
S Nik-Zainal, H Davies, J Staaf, M Ramakrishna, D Glodzik, X Zou, ...
Nature 534 (7605), 47-54, 2016
HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures
H Davies, D Glodzik, S Morganella, LR Yates, J Staaf, X Zou, ...
Nature medicine 23 (4), 517-525, 2017
ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
T Riaz, W Shehzad, A Viari, F Pompanon, P Taberlet, E Coissac
Nucleic acids research 39 (21), e145-e145, 2011
The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis
I Chambaud, R Heilig, S Ferris, V Barbe, D Samson, F Galisson, I Moszer, ...
Nucleic acids research 29 (10), 2145-2153, 2001
Somatic mutations reveal asymmetric cellular dynamics in the early human embryo
YS Ju, I Martincorena, M Gerstung, M Petljak, LB Alexandrov, R Rahbari, ...
Nature 543 (7647), 714-718, 2017
Universal replication biases in bacteria
EPC Rocha, A Danchin, A Viari
Molecular microbiology 32 (1), 11-16, 1999
A gene-expression profiling score for prediction of outcome in patients with follicular lymphoma: a retrospective training and validation analysis in three international cohorts
S Huet, B Tesson, JP Jais, AL Feldman, L Magnano, E Thomas, ...
The Lancet Oncology 19 (4), 549-561, 2018
Translation in Bacillus subtilis: roles and trends of initiation and termination, insights from a genome analysis
EPC Rocha, A Danchin, A Viari
Nucleic acids research 27 (17), 3567-3576, 1999
Evolutionary role of restriction/modification systems as revealed by comparative genome analysis
EPC Rocha, A Danchin, A Viari
Genome research 11 (6), 946-958, 2001
Pan-cancer analysis of whole genomes.
S Hirano, L Yang, M Juul, CA Purdie, BP O'Neill, R Kabbe, ...
Nature 578 (DKFZ-2020-01051), 82-93, 2020
A whole-genome sequence and transcriptome perspective on HER2-positive breast cancers
A Ferrari, A Vincent-Salomon, X Pivot, AS Sertier, E Thomas, L Tonon, ...
Nature communications 7 (1), 1-9, 2016
Palingol: a declarative programming language to describe nucleic acids' secondary structures and to scan sequence databases
B Billoud, M Kontic, A Viari
Nucleic acids research 24 (8), 1395-1403, 1996
UniPathway: a resource for the exploration and annotation of metabolic pathways
A Morgat, E Coissac, E Coudert, KB Axelsen, G Keller, A Bairoch, ...
Nucleic acids research 40 (D1), D761-D769, 2012
Oligonucleotide bias in Bacillus subtilis: general trends and taxonomic comparisons
EPC Rocha, A Viari, A Danchin
Nucleic acids research 26 (12), 2971-2980, 1998
Molecular screening program to select molecular-based recommended therapies for metastatic cancer patients: analysis from the ProfiLER trial
O Trédan, Q Wang, D Pissaloux, P Cassier, A de la Fouchardière, ...
Annals of Oncology 30 (5), 757-765, 2019
Comparative Genomic Analysis of Three Strains of Ehrlichia ruminantium Reveals an Active Process of Genome Size Plasticity
R Frutos, A Viari, C Ferraz, A Morgat, S Eychenié, Y Kandassamy, ...
Journal of bacteriology 188 (7), 2533-2542, 2006
Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration
M Smid, F Rodríguez-González, AM Sieuwerts, R Salgado, ...
Nature communications 7 (1), 1-9, 2016
Integrative and comparative genomic analyses identify clinically relevant pulmonary carcinoid groups and unveil the supra-carcinoids
N Alcala, N Leblay, AAG Gabriel, L Mangiante, D Hervás, T Giffon, ...
Nature communications 10 (1), 1-21, 2019
Repseek, a tool to retrieve approximate repeats from large DNA sequences
G Achaz, F Boyer, EPC Rocha, A Viari, E Coissac
Bioinformatics 23 (1), 119-121, 2007
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