Hidde de Jong
Hidde de Jong
Verified email at inria.fr
Title
Cited by
Cited by
Year
Modeling and simulation of genetic regulatory systems: a literature review
H De Jong
Journal of computational biology 9 (1), 67-103, 2002
30872002
Qualitative simulation of genetic regulatory networks using piecewise-linear models
H De Jong, JL Gouzé, C Hernandez, M Page, T Sari, J Geiselmann
Bulletin of mathematical biology 66 (2), 301-340, 2004
4952004
Genetic Network Analyzer: qualitative simulation of genetic regulatory networks
H De Jong, J Geiselmann, C Hernandez, M Page
Bioinformatics 19 (3), 336-344, 2003
3172003
Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli
G Batt, D Ropers, H De Jong, J Geiselmann, R Mateescu, M Page, ...
Bioinformatics 21 (suppl_1), i19-i28, 2005
2282005
Piecewise-linear models of genetic regulatory networks: equilibria and their stability
R Casey, H De Jong, JL Gouzé
Journal of mathematical biology 52 (1), 27-56, 2006
2102006
Qualitative simulation of the carbon starvation response in Escherichia coli
D Ropers, H De Jong, M Page, D Schneider, J Geiselmann
Biosystems 84 (2), 124-152, 2006
1652006
Qualitative simulation of the initiation of sporulation in Bacillus subtilis
H De Jong, J Geiselmann, G Batt, C Hernandez, M Page
Bulletin of mathematical biology 66 (2), 261-299, 2004
1552004
Shared control of gene expression in bacteria by transcription factors and global physiology of the cell
S Berthoumieux, H De Jong, G Baptist, C Pinel, C Ranquet, D Ropers, ...
Molecular systems biology 9 (1), 2013
1342013
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
C Chaouiya, D Bérenguier, SM Keating, A Naldi, MP Van Iersel, ...
BMC systems biology 7 (1), 135, 2013
1062013
Temporal logic patterns for querying dynamic models of cellular interaction networks
PT Monteiro, D Ropers, R Mateescu, AT Freitas, H De Jong
Bioinformatics 24 (16), i227-i233, 2008
1022008
Hybrid modeling and simulation of genetic regulatory networks: A qualitative approach
H De Jong, JL Gouzé, C Hernandez, M Page, T Sari, J Geiselmann
International Workshop on Hybrid Systems: Computation and Control, 267-282, 2003
812003
Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria
H De Jong, C Ranquet, D Ropers, C Pinel, J Geiselmann
BMC systems biology 4 (1), 55, 2010
792010
The computer revolution in science: Steps towards the realization of computer-supported discovery environments
H De Jong, A Rip
Artificial intelligence 91 (2), 225-256, 1997
741997
Search for steady states of piecewise-linear differential equation models of genetic regulatory networks
H De Jong, M Page
IEEE/ACM Transactions on Computational Biology and Bioinformatics 5 (2), 208-222, 2008
722008
Experiment selection for the discrimination of semi-quantitative models of dynamical systems
I Vatcheva, O Bernard, H de Jong, N Mars
722003
Qualitative simulation of genetic regulatory networks: Method and application
H De Jong, M Page, C Hernandez, J Geiselmann
IJCAI, 67-73, 2001
722001
Efficient parameter search for qualitative models of regulatory networks using symbolic model checking
G Batt, M Page, I Cantone, G Goessler, P Monteiro, H De Jong
Bioinformatics 26 (18), i603-i610, 2010
702010
Reconstruction of switching thresholds in piecewise-affine models of genetic regulatory networks
S Drulhe, G Ferrari-Trecate, H De Jong, A Viari
International Workshop on Hybrid Systems: Computation and Control, 184-199, 2006
692006
Symbolic reachability analysis of genetic regulatory networks using discrete abstractions
G Batt, H De Jong, M Page, J Geiselmann
Automatica 44 (4), 982-989, 2008
672008
The carbon assimilation network in Escherichia coli is densely connected and largely sign-determined by directions of metabolic fluxes
V Baldazzi, D Ropers, Y Markowicz, D Kahn, J Geiselmann, H De Jong
PLoS computational biology 6 (6), 2010
612010
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