Nitin Baliga
Nitin Baliga
Professor
Verified email at systemsbiology.org
TitleCited byYear
Cytoscape: a software environment for integrated models of biomolecular interaction networks
P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, ...
Genome research 13 (11), 2498-2504, 2003
149052003
Genome sequence of Halobacterium species NRC-1
WV Ng, SP Kennedy, GG Mahairas, B Berquist, M Pan, HD Shukla, ...
Proceedings of the National Academy of Sciences 97 (22), 12176-12181, 2000
7822000
Peroxiredoxins are conserved markers of circadian rhythms
RS Edgar, EW Green, Y Zhao, G van Ooijen, M Olmedo, X Qin, Y Xu, ...
Nature 485 (7399), 459, 2012
5862012
Visualization of omics data for systems biology
N Gehlenborg, SI O'donoghue, NS Baliga, A Goesmann, MA Hibbs, ...
Nature methods 7 (3s), S56, 2010
5532010
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood, NS Baliga, ...
Genome biology 7 (5), R36, 2006
5032006
CTCF physically links cohesin to chromatin
ED Rubio, DJ Reiss, PL Welcsh, CM Disteche, GN Filippova, NS Baliga, ...
Proceedings of the National Academy of Sciences 105 (24), 8309-8314, 2008
4672008
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea
NS Baliga, R Bonneau, MT Facciotti, M Pan, G Glusman, EW Deutsch, ...
Genome research 14 (11), 2221-2234, 2004
3432004
A predictive model for transcriptional control of physiology in a free living cell
R Bonneau, MT Facciotti, DJ Reiss, AK Schmid, M Pan, A Kaur, ...
Cell 131 (7), 1354-1365, 2007
2922007
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
DJ Reiss, NS Baliga, R Bonneau
BMC bioinformatics 7 (1), 280, 2006
2702006
The Gaggle: an open-source software system for integrating bioinformatics software and data sources
PT Shannon, DJ Reiss, R Bonneau, NS Baliga
BMC bioinformatics 7 (1), 176, 2006
1842006
Catabolite control protein A (CcpA) contributes to virulence and regulation of sugar metabolism in Streptococcus pneumoniae
R Iyer, NS Baliga, A Camilli
Journal of bacteriology 187 (24), 8340-8349, 2005
1812005
Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1
NS Baliga, SJ Bjork, R Bonneau, M Pan, C Iloanusi, MCH Kottemann, ...
Genome research 14 (6), 1025-1035, 2004
1632004
Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach
NS Baliga, M Pan, YA Goo, CY Eugene, DR Goodlett, K Dimitrov, ...
Proceedings of the National Academy of Sciences 99 (23), 14913-14918, 2002
1632002
Prevalence of transcription promoters within archaeal operons and coding sequences
T Koide, DJ Reiss, JC Bare, WL Pang, MT Facciotti, AK Schmid, M Pan, ...
Molecular systems biology 5 (1), 2009
1282009
A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers
CL Plaisier, M Pan, NS Baliga
Genome research 22 (11), 2302-2314, 2012
1262012
General transcription factor specified global gene regulation in archaea
MT Facciotti, DJ Reiss, M Pan, A Kaur, M Vuthoori, R Bonneau, ...
Proceedings of the National Academy of Sciences 104 (11), 4630-4635, 2007
1232007
Is gene expression in Halobacterium NRC‐1 regulated by multiple TBP and TFB transcription factors? MicroCorrespondence
NS Baliga, YA Goo, WV Ng, L Hood, CJ Daniels, S DasSarma
Molecular microbiology 36 (5), 1184-1185, 2000
1182000
metaXCMS: second-order analysis of untargeted metabolomics data
R Tautenhahn, GJ Patti, E Kalisiak, T Miyamoto, M Schmidt, FY Lo, ...
Analytical chemistry 83 (3), 696-700, 2010
1042010
A systems view of haloarchaeal strategies to withstand stress from transition metals
A Kaur, M Pan, M Meislin, MT Facciotti, R El-Gewely, NS Baliga
Genome research 16 (7), 841-854, 2006
1042006
The DNA-binding network of Mycobacterium tuberculosis
KJ Minch, TR Rustad, EJR Peterson, J Winkler, DJ Reiss, S Ma, M Hickey, ...
Nature communications 6, 5829, 2015
992015
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