Joe Parker
Joe Parker
Senior Research Fellow - National Biofilms Innovation Centre, University of Southampton
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Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty
J Parker, A Rambaut, OG Pybus
Infection, Genetics and Evolution 8 (3), 239-246, 2008
Genome-wide signatures of convergent evolution in echolocating mammals
J Parker, G Tsagkogeorga, JA Cotton, Y Liu, P Provero, E Stupka, ...
Nature 502 (7470), 228-231, 2013
Phylogenomic analyses elucidate the evolutionary relationships of bats
G Tsagkogeorga, J Parker, E Stupka, JA Cotton, SJ Rossiter
Current Biology 23 (22), 2262-2267, 2013
The mode and tempo of hepatitis C virus evolution within and among hosts
RR Gray, J Parker, P Lemey, M Salemi, A Katzourakis, OG Pybus
BMC evolutionary biology 11 (1), 1-10, 2011
Field-based species identification of closely-related plants using real-time nanopore sequencing
J Parker, AJ Helmstetter, D Devey, T Wilkinson, AST Papadopulos
Scientific reports 7 (1), 1-8, 2017
Evolutionary and phylogenetic analysis of the hepaciviruses and pegiviruses
J Thézé, S Lowes, J Parker, OG Pybus
Genome Biology and Evolution 7 (11), 2996-3008, 2015
Molecular epidemiology and phylogeny reveals complex spatial dynamics of endemic canine parvovirus
SR Clegg, KP Coyne, J Parker, S Dawson, SA Godsall, G Pinchbeck, ...
Journal of virology, JVI. 01576-10v1, 2011
Full-length characterization of hepatitis C virus subtype 3a reveals novel hypervariable regions under positive selection during acute infection
I Humphreys, V Fleming, P Fabris, J Parker, B Schulenberg, A Brown, ...
Journal of virology 83 (22), 11456-11466, 2009
Safety and immunogenicity of novel recombinant BCG and modified vaccinia virus Ankara vaccines in neonate rhesus macaques
M Rosario, J Fulkerson, S Soneji, J Parker, EJ Im, N Borthwick, ...
Journal of virology 84 (15), 7815-7821, 2010
Estimating the date of origin of an HIV-1 circulating recombinant form
KK Tee, OG Pybus, J Parker, KP Ng, A Kamarulzaman, Y Takebe
Virology 387 (1), 229-234, 2009
Diagnostic accuracy of loop-mediated isothermal amplification coupled to nanopore sequencing (LamPORE) for the detection of SARS-CoV-2 infection at scale in symptomatic and …
A Ptasinska, C Whalley, A Bosworth, C Poxon, C Bryer, N Machin, ...
Clinical microbiology and infection 27 (9), 1348. e1-1348. e7, 2021
A framework for predicting soft-fruit yields and phenology using embedded, networked microsensors, coupled weather models and machine-learning techniques
MA Lee, A Monteiro, A Barclay, J Marcar, M Miteva-Neagu, J Parker
Computers and Electronics in Agriculture 168, 105103, 2020
Generation of neutralizing antibodies and divergence of SIVmac239 in cynomolgus macaques following short-term early antiretroviral therapy
G Özkaya Şahin, EJ Bowles, J Parker, H Uchtenhagen, E Sheik-Khalil, ...
PLoS pathogens 6 (9), e1001084, 2010
Selected HIV-1 Env trimeric formulations act as potent immunogens in a rabbit vaccination model
L Heyndrickx, G Stewart-Jones, M Jansson, H Schuitemaker, E Bowles, ...
PloS one 8 (9), e74552, 2013
Speciation processes in putative island endemic sister bat species: false impressions from mitochondrial DNA and microsatellite data
HC Kuo, SF Chen, YP Fang, JA Cotton, JD Parker, G Csorba, BK Lim, ...
Molecular Ecology 24 (23), 5910-5926, 2015
Rapid parallel adaptation to anthropogenic heavy metal pollution
AST Papadopulos, AJ Helmstetter, OG Osborne, AA Comeault, DP Wood, ...
Molecular biology and evolution 38 (9), 3724-3736, 2021
RT-LAMP has high accuracy for detecting SARS-CoV-2 in saliva and naso/oropharyngeal swabs from asymptomatic and symptomatic individuals
SP Kidd, D Burns, B Armson, AD Beggs, ELA Howson, A Williams, G Snell, ...
medRxiv, 2021.06. 28.21259398, 2022
Reverse-Transcription Loop-Mediated Isothermal Amplification Has High Accuracy for Detecting Severe Acute Respiratory Syndrome Coronavirus 2 in Saliva and Nasopharyngeal …
SP Kidd, D Burns, B Armson, AD Beggs, ELA Howson, A Williams, G Snell, ...
The Journal of Molecular Diagnostics 24 (4), 320-336, 2022
Translational challenges and opportunities in biofilm science: a BRIEF for the future
CJ Highmore, G Melaugh, RJ Morris, J Parker, SOL Direito, M Romero, ...
npj Biofilms and Microbiomes 8 (1), 1-10, 2022
Rapid, raw-read reference and identification (R4IDs): A flexible platform for rapid generic species ID using long-read sequencing technology
J Parker, A Helmstetter, J Crowe, J Iacona, D Devey, AST Papadopulos
bioRxiv, 281048, 2018
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