| MISpheroID: a knowledgebase and transparency tool for minimum information in spheroid identity A Peirsman, E Blondeel, T Ahmed, J Anckaert, D Audenaert, T Boterberg, ... Nature methods 18 (11), 1294-1303, 2021 | 49 | 2021 |
| Software tools for 3D nuclei segmentation and quantitative analysis in multicellular aggregates F Piccinini, T Balassa, A Carbonaro, A Diosdi, T Toth, N Moshkov, ... Computational and structural biotechnology journal 18, 1287-1300, 2020 | 38 | 2020 |
| AnnotatorJ: an ImageJ plugin to ease hand annotation of cellular compartments R Hollandi, Á Diósdi, G Hollandi, N Moshkov, P Horváth Molecular biology of the cell 31 (20), 2179-2186, 2020 | 37 | 2020 |
| 3D-Cell-Annotator: an open-source active surface tool for single-cell segmentation in 3D microscopy images EA Tasnadi, T Toth, M Kovacs, A Diosdi, F Pampaloni, J Molnar, ... Bioinformatics 36 (9), 2948-2949, 2020 | 22 | 2020 |
| SpheroidPicker for automated 3D cell culture manipulation using deep learning I Grexa, A Diosdi, M Harmati, A Kriston, N Moshkov, K Buzas, V Pietiäinen, ... Scientific Reports 11 (1), 14813, 2021 | 17 | 2021 |
| Cell lines and clearing approaches: a single-cell level 3D light-sheet fluorescence microscopy dataset of multicellular spheroids A Diosdi, D Hirling, M Kovacs, T Toth, M Harmati, K Koos, K Buzas, ... Data in Brief 36, 107090, 2021 | 8 | 2021 |
| Image-based and machine learning-guided multiplexed serology test for SARS-CoV-2 V Pietiäinen, M Polso, E Migh, C Guckelsberger, M Harmati, A Diosdi, ... Cell Reports Methods 3 (8), 2023 | 3 | 2023 |
| A quantitative metric for the comparative evaluation of optical clearing protocols for 3D multicellular spheroids A Diosdi, D Hirling, M Kovacs, T Toth, M Harmati, K Koos, K Buzas, ... Computational and Structural Biotechnology Journal 19, 1233-1243, 2021 | 3 | 2021 |
| SpheroidPicker: An Automated 3D cell culture manipulator robot using deep learning G Istvan, D Akos, K Andras, M Nikita, H Maria, B Krisztina, P Vilja, ... bioRxiv, 2021 | 3 | 2021 |
| When the pen is mightier than the sword: semi-automatic 2 and 3D image labelling R Hollandi, D Bauer, A Diosdi, B Schrettner, T Toth, D Hirling, G Hollandi, ... bioRxiv, 2024.01. 15.575658, 2024 | | 2024 |
| Image-based and machine learning-guided multiplexed serology test for SARS-CoV-2 (preprint) V Pietiainen, M Polso, E Migh, C Guckelsberger, M Harmati, A Diosdi, ... | | 2022 |
| Automated 3D cell organoid manipulator robot for precision cancer therapies using deep learning (A3DCOMRFPCTUDL) I Grexa, A Diosdi, K Andras, M Harmati, V Pietiainen, K Buzas, K Koos, ... | | |
