Petr Matula
Petr Matula
Faculty of Informatics, Masaryk University, Brno
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An objective comparison of cell-tracking algorithms
V Ulman, M Maška, KEG Magnusson, O Ronneberger, C Haubold, ...
Nature methods 14 (12), 1141-1152, 2017
Recruitment and activation of a lipid kinase by hepatitis C virus NS5A is essential for integrity of the membranous replication compartment
S Reiss, I Rebhan, P Backes, I Romero-Brey, H Erfle, P Matula, L Kaderali, ...
Cell host & microbe 9 (1), 32-45, 2011
A benchmark for comparison of cell tracking algorithms
M Maška, V Ulman, D Svoboda, P Matula, P Matula, C Ederra, A Urbiola, ...
Bioinformatics 30 (11), 1609-1617, 2014
Federated learning enables big data for rare cancer boundary detection
S Pati, U Baid, B Edwards, M Sheller, SH Wang, GA Reina, P Foley, ...
Nature communications 13 (1), 7346, 2022
Cell tracking accuracy measurement based on comparison of acyclic oriented graphs
P Matula, M Maška, DV Sorokin, P Matula, C Ortiz-de-Solórzano, ...
PloS one 10 (12), e0144959, 2015
An efficient algorithm for measurement and correction of chromatic aberrations in fluorescence microscopy
M Kozubek, P Matula
Journal of Microscopy 200 (3), 206-217, 2000
Automated multi-view 3d image acquisition in human genome research
M Kozubek, P Matula, H Eipel, M Hausmann
Proceedings. First International Symposium on 3D Data Processing …, 2002
Combined confocal and wide‐field high‐resolution cytometry of fluorescent in situ hybridization‐stained cells
M Kozubek, S Kozubek, E Lukášová, E Bártová, M Skalníková, P Matula, ...
Cytometry: The Journal of the International Society for Analytical Cytology …, 2001
Fibroblast growth factor and canonical WNT/β-catenin signaling cooperate in suppression of chondrocyte differentiation in experimental models of FGFR signaling in cartilage
M Buchtova, V Oralova, A Aklian, J Masek, I Vesela, Z Ouyang, ...
Biochimica et Biophysica Acta (BBA)-Molecular Basis of Disease 1852 (5), 839-850, 2015
The cell tracking challenge: 10 years of objective benchmarking
M Maška, V Ulman, P Delgado-Rodriguez, E Gómez-de-Mariscal, ...
Nature Methods 20 (7), 1010-1020, 2023
miR-17-5p regulates endocytic trafficking through targeting TBC1D2/Armus
A Serva, B Knapp, YT Tsai, C Claas, T Lisauskas, P Matula, N Harder, ...
PLoS One 7 (12), e52555, 2012
Phosphorylation-dependent feedback inhibition of RIG-I by DAPK1 identified by kinome-wide siRNA screening
J Willemsen, O Wicht, JC Wolanski, N Baur, S Bastian, DA Haas, P Matula, ...
Molecular cell 65 (3), 403-415. e8, 2017
Single‐cell‐based image analysis of high‐throughput cell array screens for quantification of viral infection
P Matula, A Kumar, I Wörz, H Erfle, R Bartenschlager, R Eils, K Rohr
Cytometry Part A: The Journal of the International Society for Advancement …, 2009
Fast point-based 3-D alignment of live cells
P Matula, P Matula, M Kozubek, V Dvorak
IEEE Transactions on Image Processing 15 (8), 2388-2396, 2006
DIC image segmentation of dense cell populations by combining deep learning and watershed
F Lux, P Matula
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019 …, 2019
Automated acquisition and processing of multidimensional image data in confocal in vivo microscopy
M Kozubek, P Matula, P Matula, S Kozubek
Microscopy research and technique 64 (2), 164-175, 2004
Precise 3D image alignment in micro‐axial tomography
P Matula, M Kozubek, F Staier, M Hausmann
Journal of Microscopy 209 (2), 126-142, 2003
The SUMOylation pathway restricts gene transduction by adeno-associated viruses
C Hölscher, F Sonntag, K Henrich, Q Chen, J Beneke, P Matula, K Rohr, ...
PLoS pathogens 11 (12), e1005281, 2015
Normalizing for individual cell population context in the analysis of high-content cellular screens
B Knapp, I Rebhan, A Kumar, P Matula, NA Kiani, M Binder, H Erfle, ...
BMC bioinformatics 12, 1-14, 2011
Cell segmentation by combining marker-controlled watershed and deep learning
F Lux, P Matula
arXiv preprint arXiv:2004.01607, 2020
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