| MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis D Vallenet, A Calteau, M Dubois, P Amours, A Bazin, M Beuvin, L Burlot, ... Nucleic acids research 48 (D1), D579-D589, 2020 | 256 | 2020 |
| PPanGGOLiN: depicting microbial diversity via a partitioned pangenome graph G Gautreau, A Bazin, M Gachet, R Planel, L Burlot, M Dubois, A Perrin, ... PLoS computational biology 16 (3), e1007732, 2020 | 160 | 2020 |
| Molecular organization, biochemical function, cellular role and evolution of NfuA, an atypical Fe‐S carrier B Py, C Gerez, S Angelini, R Planel, D Vinella, L Loiseau, E Talla, ... Molecular microbiology 86 (1), 155-171, 2012 | 111 | 2012 |
| MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data C Médigue, A Calteau, S Cruveiller, M Gachet, G Gautreau, A Josso, ... Briefings in bioinformatics 20 (4), 1071-1084, 2019 | 62 | 2019 |
| On-target activity predictions enable improved CRISPR–dCas9 screens in bacteria A Calvo-Villamañán, JW Ng, R Planel, H Ménager, A Chen, L Cui, ... Nucleic acids research 48 (11), e64-e64, 2020 | 61 | 2020 |
| Ribosomal proteins: toward a next generation standard for prokaryotic systematics? HG Ramulu, M Groussin, E Talla, R Planel, V Daubin, C Brochier-Armanet Molecular phylogenetics and evolution 75, 103-117, 2014 | 37 | 2014 |
| Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium F Lassalle, R Planel, S Penel, D Chapulliot, V Barbe, A Dubost, A Calteau, ... Genome biology and evolution 9 (12), 3413-3431, 2017 | 30 | 2017 |
| RecPhyloXML: a format for reconciled gene trees W Duchemin, G Gence, AM Arigon Chifolleau, L Arvestad, MS Bansal, ... Bioinformatics 34 (21), 3646-3652, 2018 | 23 | 2018 |
| A comprehensive resource for exploring antiphage defense: DefenseFinder webservice, wiki and databases F Tesson, R Planel, AA Egorov, H Georjon, H Vaysset, B Brancotte, ... Peer Community Journal 4, 2024 | 13 | 2024 |
| No evidence that nitrogen limitation influences the elemental composition of isopod transcriptomes and proteomes CM Francois, L Duret, L Simon, F Mermillod-Blondin, F Malard, ... Molecular Biology and Evolution 33 (10), 2605-2620, 2016 | 10 | 2016 |
| Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph G Gautreau, A Bazin, M Gachet, R Planel, L Burlot, M Dubois, A Perrin, ... PLOS Computational Biology 17 (12), e1009687, 2021 | 3 | 2021 |
| MICROSCOPE: an integrated platform for the Exploration and Curation of Microbrial Genomes D Vallenet, A Calteau, S Cruveiller, M Gachet, G Gautreau, A Josso, ... Biologie, Informatiqueet Mathématiques, 119, 2017 | 1 | 2017 |
| Exploring the diversity of anti-defense systems across prokaryotes, phages, and mobile genetic elements F Tesson, E Huiting, L Wei, J Ren, M Johnson, R Planel, J Cury, Y Feng, ... bioRxiv, 2024 | | 2024 |
| ccqtl-db R Planel, V Baillet, R Torchet, V Guillemot, P Campagne, J Jaubert, ... | | 2024 |
| Web development, expertise of the Web INTEgRation group in the Bioinformatic and Biostatistics Hub J Bonche, B Brancotte, E Chapeaublanc, A Dieuaide, S Malesys, ... Journée Départementale du Département de Biologie Computationnelle de l …, 2024 | | 2024 |
| CCQTL: facilitating QTL mapping in the Collaborative Cross R Planel, V Baillet, J Jaubert, CAJ Vosshenrich, R Torchet, M Rincel, ... 20th Annual Meeting of the Complex Trait Community| Rat Genome & Models, 2023 | | 2023 |
| QTL mapping in CC mice using qtl2-derived tools (ccqtl) V Baillet, P Campagne, R Planel, V Guillemot | | 2023 |
| PanGBank: depicting microbial species diversity via PPanGGOLiN G Gautreau, A Bazin, R Planel, M Gachet, M Dubois, L Burlot, A Perrin, ... JOBIM 2019 Journées Ouvertes Biologie, Informatique et Mathématiques, 2019 | | 2019 |
| MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysis D Vallenet, A Calteau, S Cruveiller, M Dubois, A Lajus, D Roche, Z Rouy, ... keynote talk by Ludovic Orlando, Pierre-Antoine Gourraud, Eleftheria Zeggini …, 2019 | | 2019 |
| MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysis C Médigue, A Calteau, S Cruveiller, M Gachet, G Gautreau, A Josso, ... JOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, 2018 | | 2018 |
