Emma B Hodcroft
Emma B Hodcroft
Assistant Professor, Swiss Tropical and Public Health Institute, University of Basel
Verified email at - Homepage
Cited by
Cited by
Genetic variants of SARS-CoV-2—what do they mean?
AS Lauring, EB Hodcroft
Jama 325 (6), 529-531, 2021
COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation
S Marcel, AL Christian, N Richard, S Silvia, H Emma, F Jacques, Z Marcel, ...
Swiss medical weekly 150, w202205, 2020
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020
EB Hodcroft, M Zuber, S Nadeau, TG Vaughan, KHD Crawford, ...
Nature 595 (7869), 707-712, 2021
Nextclade: clade assignment, mutation calling and quality control for viral genomes
I Aksamentov, C Roemer, EB Hodcroft, RA Neher
Journal of open source software 6 (67), 3773, 2021
Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
RA Neher, R Dyrdak, V Druelle, EB Hodcroft, J Albert
Swiss medical weekly 150, w20224, 2020
Coast-to-coast spread of SARS-CoV-2 during the early epidemic in the United States
JR Fauver, ME Petrone, EB Hodcroft, K Shioda, HY Ehrlich, AG Watts, ...
Cell 181 (5), 990-996. e5, 2020
Automated analysis of phylogenetic clusters
M Ragonnet-Cronin, E Hodcroft, S Hué, E Fearnhill, V Delpech, ...
BMC bioinformatics 14, 1-10, 2013
Scientific consensus on the COVID-19 pandemic: we need to act now
NA Alwan, RA Burgess, S Ashworth, R Beale, N Bhadelia, D Bogaert, ...
The Lancet 396 (10260), e71-e72, 2020
Cryptic transmission of SARS-CoV-2 in Washington state
T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ...
Science 370 (6516), 571-575, 2020
CoVariants: SARS-CoV-2 Mutations and Variants of Interest
EB Hodcroft, 2021
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
E Alm, EK Broberg, T Connor, EB Hodcroft, AB Komissarov, ...
Eurosurveillance 25 (32), 2001410, 2020
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse
F Konings, MD Perkins, JH Kuhn, MJ Pallen, EJ Alm, BN Archer, ...
Nature microbiology 6 (7), 821-823, 2021
Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2
CBF Vogels, MI Breban, IM Ott, T Alpert, ME Petrone, AE Watkins, ...
PLoS biology 19 (5), e3001236, 2021
Urgent need for a non-discriminatory and non-stigmatizing nomenclature for monkeypox virus
C Happi, I Adetifa, P Mbala, R Njouom, E Nakoune, A Happi, N Ndodo, ...
PLoS biology 20 (8), e3001769, 2022
Public health actions to control new SARS-CoV-2 variants
ND Grubaugh, EB Hodcroft, JR Fauver, AL Phelan, M Cevik
Cell 184 (5), 1127-1132, 2021
Emergence in late 2020 of multiple lineages of SARS-CoV-2 Spike protein variants affecting amino acid position 677
EB Hodcroft, DB Domman, DJ Snyder, KY Oguntuyo, M Van Diest, ...
MedRxiv, 2021
The evolution and biology of SARS-CoV-2 variants
A Telenti, EB Hodcroft, DL Robertson
Cold Spring Harbor perspectives in medicine 12 (5), a041390, 2022
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens
J Huddleston, J Hadfield, TR Sibley, J Lee, K Fay, M Ilcisin, E Harkins, ...
Journal of open source software 6 (57), 2021
Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck
KM Braun, GK Moreno, PJ Halfmann, EB Hodcroft, DA Baker, EC Boehm, ...
PLoS pathogens 17 (2), e1009373, 2021
Want to track pandemic variants faster? Fix the bioinformatics bottleneck
EB Hodcroft, N De Maio, R Lanfear, DR MacCannell, BQ Minh, ...
Nature 591 (7848), 30-33, 2021
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