Joke Blom
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Systems biology: parameter estimation for biochemical models
M Ashyraliyev, Y Fomekong‐Nanfack, JA Kaandorp, JG Blom
The FEBS journal 276 (4), 886-902, 2009
3322009
Benchmarking stiff ODE solvers for atmospheric chemistry problems II: Rosenbrock solvers
A Sandu, JG Verwer, JG Blom, EJ Spee, GR Carmichael, FA Potra
Atmospheric environment 31 (20), 3459-3472, 1997
2901997
A second-order Rosenbrock method applied to photochemical dispersion problems
JG Verwer, EJ Spee, JG Blom, W Hundsdorfer
SIAM Journal on Scientific Computing 20 (4), 1456-1480, 1999
2671999
Algorithm 731: a moving-grid interface for systems of one-dimensional time-dependent partial differential equations
JG Blom, PA Zegeling
ACM Transactions on Mathematical Software (TOMS) 20 (2), 194-214, 1994
1331994
An implicit-explicit approach for atmospheric transport-chemistry problems
JG Verwer, JG Blom, W Hundsdorfer
Applied Numerical Mathematics 20 (1-2), 191-209, 1996
1131996
A comparison of stiff ODE solvers for atmospheric chemistry problems
JG Verwer, JG Blom, M Van Loon, EJ Spee
Atmospheric environment 30 (1), 49-58, 1996
1131996
Spatial stochastic modelling of the phosphoenolpyruvate-dependent phosphotransferase (PTS) pathway in Escherichia coli
JV Rodriguez, JA Kaandorp, M Dobrzyński, JG Blom
Bioinformatics 22 (15), 1895-1901, 2006
1092006
Parameter estimation and determinability analysis applied to Drosophila gap gene circuits
M Ashyraliyev, J Jaeger, JG Blom
BMC Systems Biology 2 (1), 83, 2008
1082008
Numerical time integration for air pollution models
JG Verwer, W Hundsdorfer, JG Blom
Modelling, Analysis and Simulation [MAS], 1998
861998
On simple moving grid methods for one-dimensional evolutionary partial differential equations
JG Blom, JM Sanz-Serna, JG Verwer
Journal of Computational Physics 74 (1), 191-213, 1988
861988
Efficient parameter estimation for spatio-temporal models of pattern formation: case study of Drosophila melanogaster
Y Fomekong-Nanfack, JA Kaandorp, J Blom
Bioinformatics 23 (24), 3356-3363, 2007
832007
A moving-grid method for one-dimensional PDEs based on the method of lines
JG Verwer, JG Blom, RM Furzeland, PA Zegeling
CWI, 1988
781988
VLUGR3: a vectorizable adaptive grid solver for PDEs in 3D, part i: algorithmic aspects and applications
JG Blom, JG Verwer
Applied Numerical Mathematics 16 (1-2), 129-156, 1994
74*1994
The numerical solution of nonlinear Volterra integral equations of the second kind by collocation and iterated collocation methods
JG Blom, H Brunner
SIAM journal on scientific and statistical computing 8 (5), 806-830, 1987
731987
Gene circuit analysis of the terminal gap gene huckebein
M Ashyraliyev, K Siggens, H Janssens, J Blom, M Akam, J Jaeger
PLoS Comput Biol 5 (10), e1000548, 2009
712009
Computational methods for diffusion-influenced biochemical reactions
M Dobrzyński, JV Rodríguez, JA Kaandorp, JG Blom
Bioinformatics 23 (15), 1969-1977, 2007
712007
Rapid flow cytometric method for measuring senescence associated β‐galactosidase activity in human fibroblasts
G Noppe, P Dekker, C de Koning‐Treurniet, J Blom, D Van Heemst, ...
Cytometry Part A: The Journal of the International Society for Advancement …, 2009
682009
Numerical time integration for air pollution problems
JG Verwer, W Hundsdorfer, JG Blom
Surveys on Mathematics for Industry 10, 107-174, 2002
672002
Algorithm 758: VLUGR2: A vectorizable adaptive-grid solver for PDEs in 2D
JG Blom, RA Trompert, JG Verwer
ACM Transactions on Mathematical Software (TOMS) 22 (3), 302-328, 1996
661996
An adaptive moving grid method for one-dimensional systems of partial differential equations
JG Verwer, JG Blom, JM Sanz-Serna
Journal of Computational Physics 82 (2), 454-486, 1989
661989
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