Nicola Segata
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Structure, function and diversity of the healthy human microbiome
C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ...
nature 486 (7402), 207, 2012
53602012
Metagenomic biomarker discovery and explanation
N Segata, J Izard, L Waldron, D Gevers, L Miropolsky, WS Garrett, ...
Genome biology 12 (6), R60, 2011
38642011
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
nature 486 (7402), 215, 2012
15012012
Metagenomic microbial community profiling using unique clade-specific marker genes
N Segata, L Waldron, A Ballarini, V Narasimhan, O Jousson, ...
Nature methods 9 (8), 811, 2012
10102012
Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis
JU Scher, A Sczesnak, RS Longman, N Segata, C Ubeda, C Bielski, ...
elife 2, e01202, 2013
9722013
Microbial co-occurrence relationships in the human microbiome
K Faust, JF Sathirapongsasuti, J Izard, N Segata, D Gevers, J Raes, ...
PLoS computational biology 8 (7), 2012
8592012
Metabolic reconstruction for metagenomic data and its application to the human microbiome
S Abubucker, N Segata, J Goll, AM Schubert, J Izard, BL Cantarel, ...
PLoS computational biology 8 (6), 2012
7892012
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
733*2019
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
DT Truong, EA Franzosa, TL Tickle, M Scholz, G Weingart, E Pasolli, ...
Nature methods 12 (10), 902-903, 2015
7012015
Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples
N Segata, SK Haake, P Mannon, KP Lemon, L Waldron, D Gevers, ...
Genome biology 13 (6), R42, 2012
5312012
A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy
K Aagaard, K Riehle, J Ma, N Segata, TA Mistretta, C Coarfa, S Raza, ...
PloS one 7 (6), 2012
4572012
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
N Segata, D Börnigen, XC Morgan, C Huttenhower
Nature communications 4 (1), 1-11, 2013
4232013
A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets
O Koren, D Knights, A Gonzalez, L Waldron, N Segata, R Knight, ...
PLoS computational biology 9 (1), 2013
3922013
Relating the metatranscriptome and metagenome of the human gut
EA Franzosa, XC Morgan, N Segata, L Waldron, J Reyes, AM Earl, ...
Proceedings of the National Academy of Sciences 111 (22), E2329-E2338, 2014
3602014
Shotgun metagenomics, from sampling to analysis
C Quince, AW Walker, JT Simpson, NJ Loman, N Segata
Nature Biotechnology 35, 833–844, 2017
3322017
Compact graphical representation of phylogenetic data and metadata with GraPhlAn
F Asnicar, G Weingart, TL Tickle, C Huttenhower, N Segata
PeerJ 3, e1029, 2015
2822015
Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission
MG Rooks, P Veiga, LH Wardwell-Scott, T Tickle, N Segata, M Michaud, ...
The ISME journal 8 (7), 1403-1417, 2014
2592014
Computational meta'omics for microbial community studies
N Segata, D Boernigen, TL Tickle, XC Morgan, WS Garrett, ...
Molecular systems biology 9 (1), 2013
2562013
Biodiversity and functional genomics in the human microbiome
XC Morgan, N Segata, C Huttenhower
Trends in genetics 29 (1), 51-58, 2013
2082013
Extensive unexplored human microbiome diversity revealed by over 150,000 genomes from metagenomes spanning age, geography, and lifestyle
E Pasolli, F Asnicar, S Manara, M Zolfo, N Karcher, F Armanini, F Beghini, ...
Cell 176 (3), 649-662. e20, 2019
1982019
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