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Kourosh Zarringhalam
Kourosh Zarringhalam
Department of Mathematics UMass Boston
Verified email at umb.edu - Homepage
Title
Cited by
Cited by
Year
Deep learning-based cross-classifications reveal conserved spatial behaviors within tumor histological images
J Noorbakhsh, S Farahmand, A Foroughi Pour, S Namburi, D Caruana, ...
Nature communications 11 (1), 6367, 2020
1282020
Integrating chemical footprinting data into RNA secondary structure prediction
K Zarringhalam, MM Meyer, I Dotu, JH Chuang, P Clote
Public Library of Science 7 (10), e45160, 2012
1032012
Deep learning trained on hematoxylin and eosin tumor region of Interest predicts HER2 status and trastuzumab treatment response in HER2+ breast cancer
S Farahmand, AI Fernandez, FS Ahmed, DL Rimm, JH Chuang, ...
Modern Pathology 35 (1), 44-51, 2022
672022
Interpreting transcriptional changes using causal graphs: new methods and their practical utility on public networks
CT Fakhry, P Choudhary, A Gutteridge, B Sidders, P Chen, D Ziemek, ...
BMC bioinformatics 17, 1-15, 2016
502016
A biological network-based regularized artificial neural network model for robust phenotype prediction from gene expression data
T Kang, W Ding, L Zhang, D Ziemek, K Zarringhalam
BMC bioinformatics 18, 1-11, 2017
382017
An open system for automatic home-cage behavioral analysis and its application to male and female mouse models of Huntington's disease
K Zarringhalam, M Ka, YH Kook, JI Terranova, Y Suh, OD King, M Um
Behavioural brain research 229 (1), 216-225, 2012
312012
Robust clinical outcome prediction based on Bayesian analysis of transcriptional profiles and prior causal networks
K Zarringhalam, A Enayetallah, P Reddy, D Ziemek
Bioinformatics 30 (12), i69-i77, 2014
292014
The modular circuitry of apicomplexan cell division plasticity
MJ Gubbels, I Coppens, K Zarringhalam, MT Duraisingh, K Engelberg
Frontiers in Cellular and Infection Microbiology 11, 670049, 2021
282021
Statistical analysis of the processes controlling choline and ethanolamine glycerophospholipid molecular species composition
K Zarringhalam, L Zhang, MA Kiebish, K Yang, X Han, RW Gross, ...
PLoS One 7 (5), e37293, 2012
262012
Nonlinear Least Squares in ℝ N
A Aldroubi, K Zaringhalam
Acta applicandae mathematicae 107, 325-337, 2009
262009
Robust phenotype prediction from gene expression data using differential shrinkage of co-regulated genes
K Zarringhalam, D Degras, C Brockel, D Ziemek
Scientific reports 8 (1), 1237, 2018
252018
Identification of competing endogenous RNAs of the tumor suppressor gene PTEN: a probabilistic approach
K Zarringhalam, Y Tay, P Kulkarni, AC Bester, PP Pandolfi, RV Kulkarni
Scientific reports 7 (1), 7755, 2017
192017
Pressure dependency of localization degree in heavy fermion CeIn3: A density functional theory analysis
M Yazdani-Kachoei, S Jalali-Asadabadi, I Ahmad, K Zarringhalam
Scientific reports 6 (1), 31734, 2016
182016
Sequential adaptive compressed sampling via huffman codes
A Aldroubi, H Wang, K Zarringhalam
Sampling Theory in Signal and Image Processing 10, 231-254, 2011
182011
Molecular causes of transcriptional response: a Bayesian prior knowledge approach
K Zarringhalam, A Enayetallah, A Gutteridge, B Sidders, D Ziemek
Bioinformatics 29 (24), 3167-3173, 2013
162013
The Extracellular Milieu of Toxoplasma's Lytic Cycle Drives Lab Adaptation, Primarily by Transcriptional Reprogramming
VA Primo Jr, Y Rezvani, A Farrell, CQ Murphy, J Lou, A Vajdi, GT Marth, ...
Msystems 6 (6), e01196-21, 2021
152021
Causal Inference Engine: a platform for directional gene set enrichment analysis and inference of active transcriptional regulators
S Farahmand, C O’Connor, JA Macoska, K Zarringhalam
Nucleic acids research 47 (22), 11563-11573, 2019
152019
Dynamics of the ethanolamine glycerophospholipid remodeling network
L Zhang, N Díaz–Díaz, K Zarringhalam, M Hermansson, P Somerharju, ...
PLoS One 7 (12), e50858, 2012
152012
Pan-cancer classifications of tumor histological images using deep learning
J Noorbakhsh, S Farahmand, M Soltanieh-ha, S Namburi, K Zarringhalam, ...
Preprint at https://www. biorxiv. org/content/10.1101/715656v1, 2019
132019
Generating an adaptive multiresolution image analysis with compact cupolets
K Zarringhalam, KM Short
Nonlinear Dynamics 52, 51-70, 2008
132008
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Articles 1–20