Rolf Backofen
Rolf Backofen
Professor für Bioinformatik, Universität Freiburg
Adresse e-mail validée de informatik.uni-freiburg.de
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An updated evolutionary classification of CRISPR–Cas systems
KS Makarova, YI Wolf, OS Alkhnbashi, F Costa, SA Shah, SJ Saunders, ...
Nature Reviews Microbiology 13 (11), 722-736, 2015
15292015
Autosomal dominant immune dysregulation syndrome in humans with CTLA4 mutations
D Schubert, C Bode, R Kenefeck, TZ Hou, JB Wing, A Kennedy, ...
Nature medicine 20 (12), 1410-1416, 2014
5392014
Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering
S Will, K Reiche, IL Hofacker, PF Stadler, R Backofen
PLoS Comput Biol 3 (4), e65, 2007
4982007
IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions
A Busch, AS Richter, R Backofen
Bioinformatics 24 (24), 2849-2856, 2008
4512008
Computational molecular biology: an introduction
PG Clote, R Backhofen
J. Wiley, 2000
3202000
LocARNA-P: accurate boundary prediction and improved detection of structural RNAs
S Will, T Joshi, IL Hofacker, PF Stadler, R Backofen
Rna 18 (5), 900-914, 2012
2382012
CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains
PR Wright, J Georg, M Mann, DA Sorescu, AS Richter, S Lott, R Kleinkauf, ...
Nucleic acids research 42 (W1), W119-W123, 2014
2352014
Freiburg RNA Tools: a web server integrating IntaRNA, ExpaRNA and LocARNA
C Smith, S Heyne, AS Richter, S Will, R Backofen
Nucleic acids research 38 (suppl_2), W373-W377, 2010
2202010
DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome
T Aktaş, İA Ilık, D Maticzka, V Bhardwaj, CP Rodrigues, G Mittler, T Manke, ...
Nature 544 (7648), 115-119, 2017
2062017
MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons
S Siebert, R Backofen
Bioinformatics 21 (16), 3352-3359, 2005
2052005
Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo
E Holmqvist, PR Wright, L Li, T Bischler, L Barquist, R Reinhardt, ...
The EMBO journal 35 (9), 991-1011, 2016
2012016
Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease
R Gilsbach, S Preissl, BA Grüning, T Schnick, L Burger, V Benes, A Würch, ...
Nature communications 5 (1), 1-13, 2014
1982014
Comparative genomics boosts target prediction for bacterial small RNAs
PR Wright, AS Richter, K Papenfort, M Mann, J Vogel, WR Hess, ...
Proceedings of the National Academy of Sciences 110 (37), E3487-E3496, 2013
1892013
Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity
M Hiller, K Huse, K Szafranski, N Jahn, J Hampe, S Schreiber, ...
Nature genetics 36 (12), 1255-1257, 2004
1872004
Pre-mRNA secondary structures influence exon recognition
M Hiller, Z Zhang, R Backofen, S Stamm
PLoS Genet 3 (11), e204, 2007
1862007
GraphProt: modeling binding preferences of RNA-binding proteins
D Maticzka, SJ Lange, F Costa, R Backofen
Genome biology 15 (1), 1-18, 2014
1622014
IntaRNA 2.0: enhanced and customizable prediction of RNA–RNA interactions
M Mann, PR Wright, R Backofen
Nucleic acids research 45 (W1), W435-W439, 2017
1602017
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants
KS Makarova, YI Wolf, J Iranzo, SA Shmakov, OS Alkhnbashi, SJJ Brouns, ...
Nature Reviews Microbiology 18 (2), 67-83, 2020
1572020
Excluding symmetries in constraint-based search
R Backofen, S Will
International Conference on Principles and Practice of Constraint …, 1999
1561999
An information extraction core system for real world german text processing
G Neumann, R Backofen, J Baur, M Becker, C Braun
arXiv preprint cmp-lg/9706023, 1997
1561997
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