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Marinka Zitnik
Marinka Zitnik
Assistant Professor, Harvard University
Adresse e-mail validée de hms.harvard.edu - Page d'accueil
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Open graph benchmark: Datasets for machine learning on graphs
W Hu, M Fey, M Zitnik, Y Dong, H Ren, B Liu, M Catasta, J Leskovec
Advances in neural information processing systems 33, 22118-22133, 2020
29342020
Orange: data mining toolbox in Python
J Demšar, T Curk, A Erjavec, Č Gorup, T Hočevar, M Milutinovič, ...
the Journal of machine Learning research 14 (1), 2349-2353, 2013
27162013
Gnnexplainer: Generating explanations for graph neural networks
Z Ying, D Bourgeois, J You, M Zitnik, J Leskovec
Advances in neural information processing systems 32, 2019
2563*2019
Strategies for pre-training graph neural networks
W Hu, B Liu, J Gomes, M Zitnik, P Liang, V Pande, J Leskovec
arXiv preprint arXiv:1905.12265, 2019
15982019
Modeling polypharmacy side effects with graph convolutional networks
M Zitnik, M Agrawal, J Leskovec
Bioinformatics 34 (13), 457-466, 2018
13262018
Scientific discovery in the age of artificial intelligence
H Wang, T Fu, Y Du, W Gao, K Huang, Z Liu, P Chandak, S Liu, ...
Nature 620 (7972), 47-60, 2023
879*2023
Predicting multicellular function through multi-layer tissue networks
M Zitnik, J Leskovec
Bioinformatics 33 (14), 190-198, 2017
6742017
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman
Information Fusion 50, 71-91, 2019
5802019
Learning Structural Node Embeddings via Diffusion Wavelets
C Donnat, M Zitnik, D Hallac, J Leskovec
Proceedings of the 24th ACM SIGKDD International Conference on Knowledge …, 2018
4772018
Network medicine framework for identifying drug-repurposing opportunities for COVID-19
D Morselli Gysi, Í Do Valle, M Zitnik, A Ameli, X Gan, O Varol, ...
Proceedings of the National Academy of Sciences 118 (19), e2025581118, 2021
4752021
Interpretability of machine learning‐based prediction models in healthcare
G Stiglic, P Kocbek, N Fijacko, M Zitnik, K Verbert, L Cilar
Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery 10 (5 …, 2020
4702020
Network Enhancement as a general method to denoise weighted biological networks
B Wang*, A Pourshafeie*, M Zitnik*, (*first co-author), J Zhu, ...
Nature Communications 9, 3108, 2018
4422018
DeepPurpose: a Deep Learning Library for Drug-Target Interaction Prediction and Applications to Repurposing and Screening
K Huang, T Fu, L Glass, M Zitnik, C Xiao, J Sun
arXiv preprint arXiv:2004.08919, 2020
396*2020
Embedding Logical Queries on Knowledge Graphs
WL Hamilton, P Bajaj, M Zitnik, D Jurafsky, J Leskovec
arXiv preprint arXiv:1806.01445, 2018
3602018
Cross-type biomedical named entity recognition with deep multi-task learning
X Wang, Y Zhang, X Ren, Y Zhang, M Zitnik, J Shang, C Langlotz, J Han
Bioinformatics 35 (10), 1745-1752, 2019
3232019
Gnnguard: Defending graph neural networks against adversarial attacks
X Zhang, M Zitnik
Advances in neural information processing systems 33, 9263-9275, 2020
3152020
Predicting human olfactory perception from chemical features of odor molecules
PM A. Keller, R.C. Gerkin, Y. Guan, A. Dhurandhar, G. Turu, B. Szalai, J.D ...
Science 355 (6327), 820-826, 2017
3092017
Therapeutics data commons: Machine learning datasets and tasks for drug discovery and development
K Huang, T Fu, W Gao, Y Zhao, Y Roohani, J Leskovec, CW Coley, ...
arXiv preprint arXiv:2102.09548, 2021
2972021
Self-supervised contrastive pre-training for time series via time-frequency consistency
X Zhang, Z Zhao, T Tsiligkaridis, M Zitnik
Advances in Neural Information Processing Systems 35, 3988-4003, 2022
2602022
Data Fusion by Matrix Factorization
M Zitnik, B Zupan
Pattern Analysis and Machine Intelligence, IEEE Transactions on 37 (1), 41-53, 2015
249*2015
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