Suivre
Erik Clarke
Erik Clarke
Postdoctoral Researcher at the University of Pennsylvania
Adresse e-mail validée de pennmedicine.upenn.edu
Titre
Citée par
Citée par
Année
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
7892018
Optimizing methods and dodging pitfalls in microbiome research
D Kim, CE Hofstaedter, C Zhao, L Mattei, C Tanes, E Clarke, A Lauder, ...
Microbiome 5, 1-14, 2017
5032017
Lack of detection of a human placenta microbiome in samples from preterm and term deliveries
JS Leiby, K McCormick, S Sherrill-Mix, EL Clarke, LR Kessler, LJ Taylor, ...
Microbiome 6, 1-11, 2018
2612018
Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments
EL Clarke, LJ Taylor, C Zhao, A Connell, JJ Lee, B Fett, FD Bushman, ...
Microbiome 7, 1-13, 2019
1572019
Ggbeeswarm: Categorical scatter (violin point) plots
E Clarke, S Sherrill-Mix, C Dawson
R package version 0.6. 0, 2017
1222017
Microbial lineages in sarcoidosis. A metagenomic analysis tailored for low–microbial content samples
EL Clarke, AP Lauder, CE Hofstaedter, Y Hwang, AS Fitzgerald, I Imai, ...
American journal of respiratory and critical care medicine 197 (2), 225-234, 2018
652018
The Gene Wiki in 2011: community intelligence applied to human gene annotation
BM Good, EL Clarke, L de Alfaro, AI Su
Nucleic acids research 40 (D1), D1255-D1261, 2012
492012
Modeling altered T-cell development with induced pluripotent stem cells from patients with RAG1-dependent immune deficiencies
PM Brauer, IM Pessach, E Clarke, JH Rowe, L Ott de Bruin, YN Lee, ...
Blood, The Journal of the American Society of Hematology 128 (6), 783-793, 2016
48*2016
A task-based approach for Gene Ontology evaluation
EL Clarke, S Loguercio, BM Good, AI Su
Journal of biomedical semantics 4, 1-11, 2013
392013
Molecular analysis of bacterial contamination on stethoscopes in an intensive care unit
VR Knecht, JE McGinniss, HM Shankar, EL Clarke, BJ Kelly, I Imai, ...
Infection Control & Hospital Epidemiology 40 (2), 171-177, 2019
382019
Bidirectional transfer of Anelloviridae lineages between graft and host during lung transplantation
AA Abbas, JC Young, EL Clarke, JM Diamond, I Imai, AR Haas, E Cantu, ...
American Journal of Transplantation 19 (4), 1086-1097, 2019
352019
T cell dynamics and response of the microbiota after gene therapy to treat X-linked severe combined immunodeficiency
EL Clarke, AJ Connell, E Six, NA Kadry, AA Abbas, Y Hwang, JK Everett, ...
Genome medicine 10, 1-14, 2018
312018
swga: a primer design toolkit for selective whole genome amplification
EL Clarke, SA Sundararaman, SN Seifert, FD Bushman, BH Hahn, ...
Bioinformatics 33 (14), 2071-2077, 2017
262017
Sherrill-Mix S. ggbeeswarm: Categorical Scatter (Violin Point) Plots. 2017
E Clarke
24
Lack of detection of a human placenta microbiome in samples from preterm and term deliveries. Microbiome 6: 196
JS Leiby, K McCormick, S Sherrill-Mix, EL Clarke, LR Kessler, LJ Taylor, ...
202018
Upper respiratory dysbiosis with a facultative-dominated ecotype in advanced lung disease and dynamic change after lung transplant
A Simon-Soro, MB Sohn, JE McGinniss, I Imai, MC Brown, VR Knecht, ...
Annals of the American Thoracic Society 16 (11), 1383-1391, 2019
162019
Linking genes to diseases with a SNPedia-Gene Wiki mashup
BM Good, EL Clarke, S Loguercio, AI Su
Journal of biomedical semantics 3, 1-10, 2012
162012
Building a biomedical semantic network in Wikipedia with Semantic Wiki Links
BM Good, EL Clarke, S Loguercio, AI Su
Database, 2012
122012
Optimizing methods and dodging pitfalls in microbiome research. Microbiome. 2017; 5 (1): 52
D Kim, CE Hofstaedter, C Zhao, L Mattei, C Tanes, E Clarke
Epub 2017/05/10. doi: 10.1186/s40168-017-0267-5. PubMed PMID: 28476139, 0
11
Optimizing methods and dodging pitfalls in microbiome research. Microbiome. 2017; 5: 52
D Kim, CE Hofstaedter, C Zhao, L Mattei, C Tanes, E Clarke
10
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